Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015533.1 Corchorus olitorius cultivar O-4 contig15566, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  43489

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
646--674
10
3.0
10
95
5
51
27
0
0
72
0.85
10238--10265
13
2.2
13
100
0
56
32
0
21
46
1.52
18357--18400
4
11.8
4
86
13
67
47
0
0
52
1.00
18357--18399
11
3.9
11
87
6
61
48
0
0
51
1.00
18357--18400
7
6.0
7
91
2
61
47
0
0
52
1.00
28879--29031
81
2.0
76
84
10
202
38
19
14
27
1.91
29038--29062
11
2.3
11
100
0
50
28
8
32
32
1.86
31269--32093
232
3.6
231
93
1
1368
28
21
16
33
1.95
32062--32192
33
4.0
33
92
0
217
23
22
25
27
2.00
40007--40075
32
2.2
32
100
0
138
20
11
15
52
1.74
42606--42640
17
2.1
17
100
0
70
28
11
5
54
1.59
43231--43264
17
2.0
17
94
0
59
32
0
5
61
1.20

Tables:   1

The End!