genome.fa.s15534.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015534.1 Corchorus olitorius cultivar O-4 contig15567, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  114703

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1416--1614	96	2.0	99	85	5	271	33	11	9	45	1.72
8256--8908	337	1.9	331	92	2	1099	35	14	13	36	1.86
8589--9723	299	3.8	298	93	2	1828	34	14	13	37	1.85
12773--12825	18	2.9	18	78	10	72	41	22	20	15	1.89
12609--12991	198	1.9	198	92	0	640	34	19	24	20	1.96
12800--13147	180	1.9	180	86	3	495	33	19	25	20	1.97
15061--15086	5	5.2	5	100	0	52	19	0	19	61	1.35
16190--16224	7	5.0	7	100	0	70	0	42	28	28	1.56
17193--17221	12	2.3	13	94	5	51	51	27	20	0	1.47
29470--29495	7	3.7	7	100	0	52	0	11	0	88	0.52
35104--35145	20	2.2	19	91	8	68	40	28	19	11	1.87
36066--36126	29	2.1	29	84	0	77	45	11	19	22	1.82
36303--36681	189	2.0	189	92	0	632	29	19	17	32	1.95
37244--37275	2	16.5	2	93	6	57	50	0	0	50	1.00
42117--42142	2	13.0	2	100	0	52	50	0	0	50	1.00
47270--47298	2	14.5	2	100	0	58	51	0	0	48	1.00
48266--48305	6	6.7	6	85	0	53	20	2	0	77	0.88
48266--48305	12	3.3	12	89	0	62	20	2	0	77	0.88
48267--48306	18	2.3	17	87	8	62	22	2	0	75	0.93
49014--49091	41	1.9	41	89	0	120	39	2	15	42	1.61
59885--59912	14	2.0	14	100	0	56	35	14	21	28	1.92
66837--66890	21	2.6	19	78	18	54	27	3	20	48	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69936--69973	15	2.5	16	87	8	53	18	31	7	42	1.79
71772--71825	21	2.5	21	81	18	67	31	3	18	46	1.67
72284--72324	21	2.0	21	85	9	57	48	2	4	43	1.37
78730--78787	27	2.1	27	90	6	91	29	10	18	41	1.84
89196--89251	24	2.3	25	84	6	78	53	3	14	28	1.57
90947--90980	18	1.9	18	88	5	52	50	8	20	20	1.75
93175--93207	17	2.0	17	88	5	50	87	0	12	0	0.53
93174--93201	12	2.3	12	100	0	56	89	0	10	0	0.49
97243--97432	63	3.0	63	92	0	308	32	31	21	14	1.94
103361--103400	1	40.0	1	100	0	80	100	0	0	0	0.00
105575--105625	19	2.7	20	85	8	63	52	0	1	45	1.12
105573--105655	11	7.2	13	70	27	55	54	1	1	43	1.16
107651--107792	73	1.9	73	98	0	275	33	26	12	27	1.93
108766--108791	1	26.0	1	100	0	52	100	0	0	0	0.00
111736--111761	2	13.0	2	100	0	52	50	0	0	50	1.00
114414--114452	2	19.5	2	100	0	78	51	0	0	48	1.00

Tables:   1

The End!