Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015535.1 Corchorus olitorius cultivar O-4 contig15568, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  124329

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1611--1666
28
2.0
28
100
0
112
39
3
0
57
1.16
4159--4213
27
2.0
28
92
3
94
23
0
7
69
1.14
17435--17473
14
2.9
13
80
3
51
53
2
2
41
1.28
17459--17713
125
2.0
127
87
7
374
50
1
10
37
1.46
22766--22834
31
2.2
31
89
0
102
36
11
17
34
1.86
32308--32333
13
2.0
13
100
0
52
38
23
7
30
1.83
38089--38251
79
2.1
79
97
0
308
49
8
10
31
1.67
38579--41406
716
3.9
716
93
0
4679
29
27
21
21
1.98
41681--41712
3
10.7
3
93
0
55
0
28
0
71
0.86
41680--41717
9
4.3
9
90
3
51
0
23
0
76
0.79
42442--42535
47
2.0
47
100
0
188
34
10
10
44
1.74
43407--43452
7
6.7
7
80
14
60
56
2
0
41
1.11
43496--43528
13
2.5
13
95
0
57
36
6
12
45
1.66
43523--43552
2
15.5
2
93
6
53
50
0
0
50
1.00
51163--51258
45
2.2
42
89
7
140
38
22
4
34
1.74
51988--52421
217
2.0
214
92
2
717
44
15
13
26
1.83
70060--70688
331
1.9
330
83
5
817
36
16
14
32
1.89
70926--70969
21
2.1
21
83
8
54
63
13
0
22
1.29
74258--74312
26
2.1
26
90
6
85
27
10
10
50
1.70
81215--81275
21
3.0
20
86
6
79
32
18
11
37
1.86
84113--84137
12
2.1
12
100
0
50
8
32
8
52
1.60
85281--85338
19
2.9
19
75
9
62
41
12
17
29
1.85
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
98474--98512
17
2.3
17
90
0
60
46
25
0
28
1.53
99224--99285
29
2.1
29
96
0
115
33
4
17
43
1.71
108094--108148
25
2.2
25
90
6
85
38
3
16
41
1.66
112149--112200
6
8.5
6
78
4
50
13
5
3
76
1.10
113857--113938
42
2.0
42
92
0
137
47
15
4
31
1.67
114002--114113
56
2.0
56
98
1
217
40
1
23
34
1.65
115195--115249
25
2.2
26
83
9
69
49
1
3
45
1.30
121164--121225
31
2.0
31
93
0
106
41
6
17
33
1.75
124104--124165
31
2.0
31
93
0
106
41
6
17
33
1.75

Tables:   1

The End!