Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015536.1 Corchorus olitorius cultivar O-4 contig15569, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  37760

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1167--1228
31
2.0
31
93
0
106
41
6
17
33
1.75
5550--5685
60
2.3
60
90
0
218
33
19
19
28
1.96
5584--5686
31
3.4
31
70
15
97
35
18
18
27
1.94
5729--5888
60
2.7
60
87
1
232
28
18
16
36
1.93
5759--5857
29
3.3
29
67
10
83
30
19
15
35
1.92
6591--6625
8
4.4
8
100
0
70
0
11
0
88
0.51
12679--12755
31
2.6
28
79
15
84
38
5
7
48
1.55
12689--12749
31
1.9
33
87
12
92
39
4
9
45
1.59
18605--18671
31
2.2
30
92
5
109
49
11
17
20
1.79
18811--18889
31
2.5
31
89
0
122
36
17
8
36
1.81
19576--19610
14
2.6
14
90
4
54
57
5
0
37
1.23
19890--20026
31
4.5
31
83
3
116
39
14
14
31
1.86
19887--19999
60
1.9
60
86
0
163
39
15
14
30
1.86
20133--20199
31
2.2
31
89
5
102
22
19
10
47
1.79
21907--21978
33
2.1
34
92
2
119
48
29
8
13
1.72
21907--21989
33
2.5
33
88
5
105
49
27
8
14
1.72
22615--22661
24
2.0
24
95
0
85
57
2
31
8
1.41
31439--32387
22
43.1
22
66
14
203
36
17
8
37
1.81
31620--31704
23
3.7
23
82
6
100
41
12
4
41
1.64
31674--31827
41
3.8
39
77
12
116
35
16
8
39
1.79
32234--32288
28
1.9
29
85
10
78
40
9
7
43
1.64
32402--32491
22
3.7
24
79
15
96
40
12
7
40
1.71
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32615--32735
22
5.5
22
72
9
88
36
16
10
36
1.84
32615--32734
43
2.8
44
80
5
127
36
16
10
35
1.84
32576--32760
22
8.5
22
70
12
87
36
13
11
38
1.81
32836--32886
21
2.4
22
83
6
68
39
13
11
35
1.82
32846--32885
21
1.9
21
94
0
71
35
12
12
40
1.81
33522--33638
22
5.4
22
72
2
74
29
11
18
39
1.87
36305--36355
11
4.5
11
76
11
50
31
3
0
64
1.11
37565--37655
45
2.0
45
93
0
155
42
9
14
32
1.78
37581--37671
45
2.0
45
81
8
105
43
12
15
28
1.82

Tables:   1

The End!