Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015537.1 Corchorus olitorius cultivar O-4 contig15570, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  48574

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
739--818
21
3.7
22
77
12
69
50
6
17
26
1.70
740--806
21
3.1
23
81
10
72
53
5
16
23
1.65
767--820
21
2.6
21
87
0
72
46
3
20
29
1.68
821--940
22
5.5
22
79
11
131
40
10
11
37
1.77
1101--1152
23
2.3
23
83
6
61
36
9
0
53
1.34
10474--10530
25
2.4
24
88
5
80
31
5
3
59
1.36
17007--17046
20
2.0
20
95
0
71
22
25
27
25
2.00
19228--19325
29
3.3
28
68
16
81
34
20
19
25
1.96
19197--19358
60
2.7
60
90
0
261
35
17
19
27
1.94
19193--19358
31
5.5
31
67
11
128
34
18
19
28
1.95
19443--19539
29
3.3
29
67
16
90
25
18
20
35
1.95
19468--19574
31
3.5
31
70
14
96
24
19
21
34
1.96
19443--19570
60
2.1
60
95
0
229
25
18
20
35
1.95
22150--22187
3
12.7
3
89
10
60
65
0
31
2
1.06
22770--22811
21
2.0
21
100
0
84
14
9
38
38
1.78
24697--24801
49
2.1
49
87
0
156
47
11
22
18
1.80
45620--45655
17
2.1
17
100
0
72
44
11
5
38
1.63

Tables:   1

The End!