genome.fa.s15539.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015539.1 Corchorus olitorius cultivar O-4 contig15572, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  34788

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
397--449	24	2.2	25	82	3	63	24	16	16	41	1.89
6008--6048	21	1.9	22	85	5	57	46	29	14	9	1.77
6365--6396	16	2.0	16	93	0	55	18	46	12	21	1.82
7267--7300	12	2.8	12	90	4	50	55	0	2	41	1.15
7981--8141	78	2.1	78	88	2	234	52	0	11	35	1.43
8590--8635	21	2.2	21	88	0	65	23	8	13	54	1.66
8597--8636	21	1.9	21	100	0	80	20	5	15	60	1.53
8600--8646	21	2.2	21	84	0	58	23	6	19	51	1.70
10523--10601	29	2.7	30	82	5	90	29	17	11	41	1.84
11029--11388	180	2.0	179	87	1	524	50	3	11	34	1.57
11767--11842	31	2.5	31	82	4	82	28	17	11	42	1.84
11940--12014	29	2.5	30	84	4	89	40	9	18	32	1.83
12371--12533	22	7.4	22	72	10	82	40	12	12	34	1.80
12358--12466	44	2.5	44	84	0	146	41	12	11	34	1.79
12383--12532	66	2.3	67	81	9	166	42	12	11	34	1.79
12521--12622	42	2.4	42	98	0	195	33	10	24	31	1.90
12521--12634	42	2.8	39	90	7	142	35	10	21	32	1.88
12601--12677	22	3.5	22	82	5	75	36	6	22	35	1.80
12714--12769	19	2.8	20	80	15	71	35	5	16	42	1.70
12823--12882	22	2.7	22	78	0	66	36	16	11	35	1.85
12851--12902	22	2.3	22	83	3	59	34	15	11	38	1.83
15500--15582	22	3.8	21	73	17	64	57	1	2	38	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15502--15550	25	2.0	25	84	8	64	59	0	0	40	0.98
21519--21565	23	1.9	23	83	12	58	38	12	6	42	1.69
21607--21685	34	2.4	33	85	4	104	43	6	8	41	1.61
21802--22105	151	2.0	152	91	4	490	42	19	16	22	1.89
22113--22152	15	2.6	16	88	4	55	62	12	10	15	1.54
26229--26647	67	6.3	67	81	9	393	24	20	14	40	1.90
26230--26723	65	7.4	65	77	14	390	24	20	14	40	1.90
26297--26723	199	2.1	199	86	6	591	24	21	14	39	1.91

Tables:   1

The End!