Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015540.1 Corchorus olitorius cultivar O-4 contig15573, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  50031

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
615--685
31
2.3
31
90
0
115
22
12
28
36
1.91
877--916
22
1.9
21
85
10
55
32
17
17
32
1.93
5288--5358
31
2.3
31
90
4
108
35
12
15
36
1.86
5513--5549
18
2.1
18
100
0
74
35
5
21
37
1.77
6233--6262
15
2.0
15
93
0
51
10
30
33
26
1.89
8883--8910
11
2.5
11
100
0
56
25
28
28
17
1.98
9120--9187
33
2.1
33
97
0
127
30
20
23
25
1.98
10673--10718
23
2.0
24
83
12
60
52
6
4
36
1.47
14364--14398
15
2.3
16
90
9
56
20
5
31
42
1.75
21201--21270
31
2.3
31
94
0
122
25
11
27
35
1.90
23211--23235
1
25.0
1
100
0
50
100
0
0
0
0.00
38139--38206
33
2.1
33
83
5
84
32
19
11
36
1.88
38860--38906
22
2.1
22
100
0
94
48
17
8
25
1.74
43204--43248
22
2.1
22
92
8
76
51
8
8
31
1.64
43213--43256
22
2.0
22
90
0
70
52
9
11
27
1.67

Tables:   1

The End!