genome.fa.s15542.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015542.1 Corchorus olitorius cultivar O-4 contig15575, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  63784

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4400--4643	123	1.9	128	91	7	408	38	10	1	49	1.46
4629--4667	14	2.9	13	80	3	51	41	2	2	53	1.28
8702--8830	60	2.2	60	95	0	231	25	21	9	43	1.82
23502--24622	626	1.8	612	82	7	1436	35	16	12	35	1.87
23990--25705	655	2.6	658	79	7	1657	35	15	14	34	1.87
24004--25703	333	5.1	328	79	7	1580	35	15	14	34	1.87
25874--25904	2	15.5	2	93	0	53	54	45	0	0	0.99
26683--26757	38	2.1	35	82	7	87	56	2	4	37	1.32
29328--29470	75	1.9	75	82	2	180	37	18	14	29	1.91
29409--29581	75	2.3	75	76	4	161	37	17	15	29	1.91
34502--34556	22	2.5	22	75	3	56	36	18	14	30	1.91
34606--34878	22	12.6	22	69	15	86	36	14	8	39	1.77
34647--34731	23	3.8	22	83	9	100	40	15	7	37	1.74
34606--34879	66	4.2	67	72	13	180	36	14	8	40	1.76
34606--34897	44	6.8	43	73	14	185	35	15	8	40	1.78
34978--35130	22	6.8	24	73	12	96	33	15	9	42	1.78
35208--35349	22	6.5	22	77	9	110	38	19	7	34	1.81
35188--35349	44	3.7	42	76	8	153	37	18	8	35	1.82
35458--35578	22	5.5	21	78	7	116	33	17	9	38	1.83
35458--35582	66	1.9	66	85	6	173	34	18	9	37	1.83
35463--35578	44	2.6	44	78	8	128	35	18	9	37	1.83
36727--36787	4	15.8	4	74	19	58	52	19	1	26	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36726--36766	12	3.4	12	89	0	64	53	17	2	26	1.56
47979--48003	13	1.9	13	100	0	50	56	0	0	44	0.99
48340--48364	13	1.9	13	100	0	50	56	0	0	44	0.99
47817--48903	361	3.1	356	87	6	1451	37	14	10	37	1.80
51384--51426	20	2.2	20	83	8	52	53	6	6	32	1.55
53152--53228	31	2.4	32	86	4	111	22	22	11	44	1.85
57441--57478	13	3.0	13	92	3	60	42	10	7	39	1.69
62965--63001	6	5.8	6	96	3	56	37	13	0	48	1.43
62963--63002	14	2.9	14	85	14	57	40	12	0	47	1.41
63202--63256	28	2.0	27	86	10	76	12	10	27	49	1.74

Tables:   1

The End!