Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01015544.1 Corchorus olitorius cultivar O-4 contig15577, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7687
ACGTcount: A:0.33, C:0.15, G:0.16, T:0.36


Found at i:2680 original size:50 final size:50

Alignment explanation


    Indices: 2621--2720  Score: 200
    Period size: 50  Copynumber: 2.0  Consensus size: 50

       2611 TTAATCAAAA

                                                              
       2621 TAGTTTATTTGTTGGGGAAGGGATTTGTTGGCTCATAGATTAGCGTTTCG
          1 TAGTTTATTTGTTGGGGAAGGGATTTGTTGGCTCATAGATTAGCGTTTCG

                                                              
       2671 TAGTTTATTTGTTGGGGAAGGGATTTGTTGGCTCATAGATTAGCGTTTCG
          1 TAGTTTATTTGTTGGGGAAGGGATTTGTTGGCTCATAGATTAGCGTTTCG

       2721 ATAACGTAGC


Statistics
Matches: 50,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  50   50  1.00

ACGTcount: A:0.18, C:0.08, G:0.32, T:0.42


Consensus pattern (50 bp):   
TAGTTTATTTGTTGGGGAAGGGATTTGTTGGCTCATAGATTAGCGTTTCG

Found at i:3576 original size:2 final size:2

Alignment explanation


    Indices: 3565--3599  Score: 63
    Period size: 2  Copynumber: 18.0  Consensus size: 2

       3555 GGACCCAATC

                                                                 
       3565 TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA

       3600 CTTATTCTTG


Statistics
Matches: 32,  Mismatches: 0, Indels: 2
        0.94            0.00        0.06

Matches are distributed among these distances:
   1    1  0.03
   2   31  0.97

ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49


Consensus pattern (2 bp):   
TA

Done.