Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01015548.1 Corchorus olitorius cultivar O-4 contig15581, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 19211
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.32


Found at i:5542 original size:20 final size:20

Alignment explanation


    Indices: 5517--5555  Score: 62
    Period size: 20  Copynumber: 1.9  Consensus size: 20

       5507 CTTTTCTTCC

                                 
       5517 TATTTCTT-TTTGGGCTCATA
          1 TATTTCTTATTTGGG-TCATA

                               
       5537 TATTTCTTATTTGGGTCAT
          1 TATTTCTTATTTGGGTCAT

       5556 TCCTTCGCTT


Statistics
Matches: 18,  Mismatches: 0, Indels: 2
        0.90            0.00        0.10

Matches are distributed among these distances:
  20   12  0.67
  21    6  0.33

ACGTcount: A:0.15, C:0.13, G:0.15, T:0.56


Consensus pattern (20 bp):   
TATTTCTTATTTGGGTCATA

Done.