Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015549.1 Corchorus olitorius cultivar O-4 contig15582, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  44703

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3364--3400
6
6.2
6
90
9
58
0
29
16
54
1.43
4090--4118
15
1.9
15
100
0
58
37
6
6
48
1.57
8113--8318
60
3.3
62
84
6
256
35
10
20
32
1.87
8108--8313
66
3.3
62
84
5
254
35
11
20
32
1.88
9205--9357
80
1.9
80
93
0
261
43
7
23
25
1.81
10203--10514
158
2.0
159
87
6
463
29
12
9
47
1.74
12223--12253
12
2.6
12
100
0
62
0
0
41
58
0.98
14735--15594
442
2.0
432
81
4
1028
31
13
11
43
1.80
16659--16719
30
2.0
30
90
0
95
49
9
26
14
1.75
24496--24530
3
12.3
3
88
11
56
37
0
0
62
0.95
24498--24530
8
4.0
8
96
4
57
36
0
0
63
0.95
24496--24528
11
3.0
11
83
16
50
36
0
0
63
0.95
25216--25344
42
3.1
42
100
0
258
27
21
25
25
2.00
29566--29604
19
2.1
19
90
0
60
64
0
20
15
1.30
38748--38804
30
1.9
30
96
0
105
26
28
15
29
1.96

Tables:   1

The End!