Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015550.1 Corchorus olitorius cultivar O-4 contig15583, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  53259

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2700--2883
96
1.9
96
97
0
350
22
2
25
50
1.62
3707--3910
103
2.0
101
94
3
356
24
9
16
49
1.75
3928--3957
5
6.0
5
100
0
60
60
0
0
40
0.97
4202--4279
31
2.5
31
91
2
122
23
23
17
35
1.95
4207--4298
30
3.0
30
90
1
130
20
20
19
39
1.93
4295--4340
13
3.3
13
82
11
56
17
10
28
43
1.82
4295--4348
29
1.9
27
81
7
63
14
11
27
46
1.79
10685--10842
75
2.1
75
83
0
190
33
13
40
12
1.82
10903--11043
6
22.5
6
70
13
52
45
2
49
2
1.28
10894--10945
18
3.1
17
78
13
54
51
1
44
1
1.23
10898--11043
24
5.8
24
69
10
78
45
2
49
2
1.28
10928--11015
33
2.7
33
76
0
86
45
3
48
2
1.31
10961--11027
18
3.9
18
76
11
68
44
1
53
0
1.09
10983--11047
12
5.4
12
83
0
76
44
0
55
0
0.99
10983--11043
18
3.4
18
79
4
61
45
0
54
0
1.00
10964--11050
45
2.0
45
84
6
117
44
1
54
0
1.07
22932--22976
23
2.0
23
86
0
63
28
20
13
37
1.90
29350--29385
6
6.0
6
86
0
54
13
2
66
16
1.36
36540--36571
2
17.0
2
87
12
50
50
0
0
50
1.00
36540--36576
14
2.6
15
87
8
51
48
0
0
51
1.00
36696--36768
38
1.9
37
86
8
103
21
28
28
20
1.98
37724--37758
2
17.5
2
100
0
70
48
0
0
51
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
51743--51807
35
1.9
33
100
0
112
55
20
0
24
1.43

Tables:   1

The End!