Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015551.1 Corchorus olitorius cultivar O-4 contig15584, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35026

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
216--257
22
1.9
22
85
0
57
33
21
14
30
1.93
281--352
22
3.3
22
69
7
65
41
18
4
36
1.69
254--383
44
2.9
44
87
3
152
43
16
4
36
1.68
276--383
44
2.4
44
93
1
180
43
16
2
37
1.63
3298--3358
29
2.1
30
87
3
88
40
4
4
49
1.46
13463--13516
21
2.7
20
85
5
81
27
14
18
38
1.90
13470--13517
21
2.3
21
100
0
96
20
12
20
45
1.83
19157--19185
7
4.1
7
100
0
58
13
41
0
44
1.44
19655--19684
2
15.0
2
92
0
51
50
46
3
0
1.18
22162--22233
37
1.9
37
86
8
101
41
6
16
34
1.75
23102--23197
48
2.0
48
95
0
174
21
17
34
26
1.96
23177--23227
3
17.0
3
95
0
93
1
0
64
33
1.05
26584--26638
27
2.0
27
96
0
101
45
18
5
30
1.72
26752--26814
21
3.1
21
67
17
60
53
4
34
6
1.47
26852--26891
20
2.0
20
100
0
80
0
30
20
50
1.49
27255--27287
15
2.2
15
89
10
50
3
9
0
87
0.63
27252--27290
18
2.1
18
86
13
53
2
10
0
87
0.65
27259--27290
10
3.2
10
95
0
55
3
6
0
90
0.53
33845--33933
46
1.9
46
83
0
115
31
20
21
26
1.98
34909--35026
4
31.0
4
71
21
78
74
0
24
0
0.87
34899--35017
30
3.9
29
73
23
95
73
0
25
0
0.88
34907--35025
43
3.0
37
79
17
107
74
0
24
0
0.87
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
34901--35020
47
2.7
43
78
18
127
74
0
25
0
0.88
34908--35005
6
16.3
6
72
16
71
75
0
23
1
0.86

Tables:   1

The End!