Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015552.1 Corchorus olitorius cultivar O-4 contig15585, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  34438

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
271--307
4
10.0
4
88
11
53
78
0
21
0
0.75
268--299
15
2.1
15
100
0
64
75
0
25
0
0.81
425--487
5
12.0
5
78
18
58
79
0
19
1
0.82
426--530
8
12.1
8
72
18
68
78
0
16
5
0.94
428--530
27
3.8
26
83
8
111
77
0
16
5
0.95
574--628
28
2.0
28
85
3
76
36
18
9
36
1.82
4812--4880
34
2.0
34
100
0
138
20
8
30
40
1.82
5235--5309
26
2.9
27
84
7
93
22
30
22
24
1.99
7382--7425
11
4.0
11
88
8
54
43
0
2
54
1.12
7599--7763
29
5.5
30
69
15
119
33
19
21
26
1.97
7602--7762
60
2.7
60
93
1
263
34
18
21
26
1.96
7803--7970
31
5.6
30
67
16
89
26
18
20
35
1.95
7835--7935
29
3.4
29
67
15
89
25
18
20
34
1.96
7804--7966
60
2.7
60
89
1
247
25
18
20
36
1.95
11527--11846
166
1.9
164
81
6
389
26
5
23
44
1.74
15250--15289
20
2.0
20
85
9
55
27
7
2
62
1.35
15458--15632
22
7.9
21
74
12
145
35
9
17
38
1.81
15689--16768
22
49.5
21
69
14
346
39
9
15
34
1.81
16359--16438
23
3.5
23
91
1
117
41
6
13
38
1.70
22231--22404
87
2.0
87
100
0
348
16
18
10
55
1.69
23170--23226
20
2.8
19
84
7
60
3
3
17
75
1.09
23193--23230
14
2.7
14
91
0
67
0
0
23
76
0.79
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
23170--23226
6
8.7
6
76
16
51
3
3
17
75
1.09
24755--24780
1
26.0
1
100
0
52
0
0
0
100
0.00
27526--27568
23
2.0
21
90
9
68
11
4
18
65
1.42
27595--27634
19
2.1
19
90
9
64
55
10
12
22
1.67
29785--29861
21
3.7
21
92
0
109
11
51
22
14
1.74
30062--30111
21
2.4
21
93
0
82
16
46
24
14
1.83
30298--30322
2
12.5
2
100
0
50
52
0
0
48
1.00
33669--34051
190
2.0
190
98
0
748
21
9
19
48
1.77

Tables:   1

The End!