Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01015554.1 Corchorus olitorius cultivar O-4 contig15587, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 25115
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Found at i:6915 original size:25 final size:25
Alignment explanation
Indices: 6879--6938 Score: 77
Period size: 25 Copynumber: 2.4 Consensus size: 25
6869 TACCCCTTTT
6879 TTAAATATATTTCTAAAT-TGTCATTA
1 TTAAA-ATATTT-TAAATATGTCATTA
* *
6905 TTAAAATATTTTAATTATGTTATTA
1 TTAAAATATTTTAAATATGTCATTA
6930 TTAAAATAT
1 TTAAAATAT
6939 AATTTTATGT
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
24 4 0.13
25 22 0.71
26 5 0.16
ACGTcount: A:0.42, C:0.03, G:0.03, T:0.52
Consensus pattern (25 bp):
TTAAAATATTTTAAATATGTCATTA
Found at i:7024 original size:26 final size:26
Alignment explanation
Indices: 6977--7035 Score: 84
Period size: 26 Copynumber: 2.3 Consensus size: 26
6967 TATTTTTTTC
*
6977 AAATATATTTTAAATTGTCATTATTA
1 AAATATATTTTAAATTGCCATTATTA
*
7003 AAATATA-TTTAACTATGCCATTATTA
1 AAATATATTTTAAAT-TGCCATTATTA
7029 AAATATA
1 AAATATA
7036 GTAATAATTT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
25 6 0.20
26 24 0.80
ACGTcount: A:0.46, C:0.07, G:0.03, T:0.44
Consensus pattern (26 bp):
AAATATATTTTAAATTGCCATTATTA
Found at i:7728 original size:331 final size:331
Alignment explanation
Indices: 7102--8284 Score: 1408
Period size: 338 Copynumber: 3.6 Consensus size: 331
7092 AATATAATTT
* *
7102 TTTAATTAGAAATTAATTCGGAAAAAGGTAGGAAAAGCGATATTAGAAGCGTGAGAAGCCCTTCA
1 TTTAATTAGAAATTAATTCGGAAAAA-ATAGGAAAAACGATATTAGAAGCGTGAGAAGCCCTTCA
* * * * ** * * *
7167 GTCTTTTTGGCGTTGAATTATATATTTTTTATTAGTATTGTGGCCCAAAATTAAGGAGAAATTTC
65 ATCTTTTTGGTGTTGAATTATATATTTTTTATGAATATCATGGCCAAAAATTGAGGAGAAATTTT
** *
7232 TCGGGTCAATTTTTGTTAAATTTTAGCTGAAATCGTG----TACCATCACGGTTTTTGACTAAAA
130 TCGGGTCAATTTTTGCAAAATTTTAGCCGAAATCGTGTACTTACCATCACGGTTTTTGACTAAAA
* * * *
7293 ACACGTTCCGGAGCCCCGGCTCTGTTTTACACGATTTTTGGCGCCAAGTCTCATTGAAATATCTA
195 ACGCGTTCCGG-GCCTCGGCTCTGTTTTGCATGATTTTTGGCGCCAAGTCTCATTGAAATATCTA
* * *
7358 TATTCATCTAACCAAATCTTACCCACATTGGATTTAAGGATTT-TTTTTACGAGCATATGAATCA
259 TATTCATCTAACCAAATCTCAACCACATTGGATTTAAGGATTTGTTTTTACGAGCATCTGAATCA
7422 TGTTTCGA
324 TGTTTCGA
* * *
7430 TTCAATTAGGAATTAATTCGGAAAAAATAGGAAAAACGATATTAGAAGCGTGA-ATAGCCTTTCA
1 TTTAATTAGAAATTAATTCGGAAAAAATAGGAAAAACGATATTAGAAGCGTGAGA-AGCCCTTCA
*
7494 ATATTTTTGGTGTTGAATTATATATTTTTTATGAATATCATGGCCAAAAATTGA-GA-AAAGTTC
65 ATCTTTTTGGTGTTGAATTATATATTTTTTATGAATATCATGGCCAAAAATTGAGGAGAAA-TT-
* * * * *
7557 TTTCGGATCAATTTTTACAAAATTTTAGCCGAAATCGCGTACTTACTATCACGGTTTTTGGCTAA
128 TTTCGGGTCAATTTTTGCAAAATTTTAGCCGAAATCGTGTACTTACCATCACGGTTTTTGACTAA
* * **
7622 AAACGCGTTCCGTGGCCTCGGCTCAGTTTTGCATGATTTTTTGCGCCAAAACTCATTGAAATATC
193 AAACGCGTTCCG-GGCCTCGGCTCTGTTTTGCATGATTTTTGGCGCCAAGTCTCATTGAAATATC
* ** ** *
7687 TATATTTATCTAAAAAAATCTCAGTCACATTGGATTTAAGGATTTGTTTTTACGAGCATCTCAAT
257 TATATTCATCTAACCAAATCTCAACCACATTGGATTTAAGGATTTGTTTTTACGAGCATCTGAAT
7752 C-TGGTTTCGA
322 CAT-GTTTCGA
* *
7762 TTTAATTAGAAATTAATTCGG-AAAAATAGAAAAAAAAAACAATATTAGAAGCGTGAGAAGCCCT
1 TTTAATTAGAAATTAATTCGGAAAAAATAG----GAAAAACGATATTAGAAGCGTGAGAAGCCCT
* * ** **
7826 TCAATCTTTTTGGTGTTGAGTTATATATTTTATATGAATATGGTGGCCGGAAATTGAGGAGAAAT
62 TCAATCTTTTTGGTGTTGAATTATATATTTTTTATGAATATCATGGCCAAAAATTGAGGAGAAAT
* * * * *
7891 GTTTT-GTGTCAAGTTTTGCAAAATTATTTTAGCCGAAATCATGTACTAACCATCACAGTTTTTG
127 -TTTTCGGGTCAATTTTTGC-AAA--ATTTTAGCCGAAATCGTGTACTTACCATCACGGTTTTTG
* * *
7955 ACTCAAAACGCGTTTCGGGGTCCT-GGCTCTGTTTTGCATGATTTTTGGCGCCAAGTCTAATTGA
188 ACTAAAAACGCG-TTCCGGG-CCTCGGCTCTGTTTTGCATGATTTTTGGCGCCAAGTCTCATTGA
* *
8019 AATATCTATATCCATCTAACCAAATCTCAACCACATTGGATTTAAGGATTTGTTTTTACAAGCAT
251 AATATCTATATTCATCTAACCAAATCTCAACCACATTGGATTTAAGGATTTGTTTTTACGAGCAT
8084 CTGAATCATGTTTCGA
316 CTGAATCATGTTTCGA
* * * * * **
8100 TTTAATTATAAATTAATTCGAAAAAAATAAGAAAACCGATATTAGAAGCGTGAAAAGCATTTCAA
1 TTTAATTAGAAATTAATTCGGAAAAAATAGGAAAAACGATATTAGAAGCGTGAGAAGCCCTTCAA
*** * * *
8165 TCTTTTTACAG-TGAATTATATATTTTTTATGAGTATCATGGCAAAAAATTTAGGA-AAATTCTT
66 TCTTTTTGGTGTTGAATTATATATTTTTTATGAATATCATGGCCAAAAATTGAGGAGAAATT-TT
* * *
8228 TTGGGTAAATTTTCT-CAAAATTTTAACCGAAATCGTGTA-TTAACCATCACGGTTTTT
130 TCGGGTCAATTTT-TGCAAAATTTTAGCCGAAATCGTGTACTT-ACCATCACGGTTTTT
8285 AGTAACAAAG
Statistics
Matches: 722, Mismatches: 104, Indels: 55
0.82 0.12 0.06
Matches are distributed among these distances:
325 3 0.00
326 5 0.01
327 110 0.15
328 24 0.03
330 1 0.00
331 155 0.21
332 46 0.06
333 10 0.01
334 44 0.06
335 124 0.17
336 10 0.01
337 4 0.01
338 171 0.24
339 15 0.02
ACGTcount: A:0.33, C:0.15, G:0.17, T:0.36
Consensus pattern (331 bp):
TTTAATTAGAAATTAATTCGGAAAAAATAGGAAAAACGATATTAGAAGCGTGAGAAGCCCTTCAA
TCTTTTTGGTGTTGAATTATATATTTTTTATGAATATCATGGCCAAAAATTGAGGAGAAATTTTT
CGGGTCAATTTTTGCAAAATTTTAGCCGAAATCGTGTACTTACCATCACGGTTTTTGACTAAAAA
CGCGTTCCGGGCCTCGGCTCTGTTTTGCATGATTTTTGGCGCCAAGTCTCATTGAAATATCTATA
TTCATCTAACCAAATCTCAACCACATTGGATTTAAGGATTTGTTTTTACGAGCATCTGAATCATG
TTTCGA
Found at i:8965 original size:36 final size:36
Alignment explanation
Indices: 8894--8968 Score: 96
Period size: 36 Copynumber: 2.1 Consensus size: 36
8884 ATATCACAAG
* * * *
8894 AAATTCCATACAGCCCATATTTAAAATTAAATTCAA
1 AAATTCAATACAGCCCAAATATAAAACTAAATTCAA
* *
8930 AAATTCAATACAGCCCAAATATATAACTAAGTTCAA
1 AAATTCAATACAGCCCAAATATAAAACTAAATTCAA
8966 AAA
1 AAA
8969 CATTCACTTT
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
36 33 1.00
ACGTcount: A:0.51, C:0.19, G:0.04, T:0.27
Consensus pattern (36 bp):
AAATTCAATACAGCCCAAATATAAAACTAAATTCAA
Found at i:14897 original size:23 final size:23
Alignment explanation
Indices: 14860--14916 Score: 66
Period size: 23 Copynumber: 2.6 Consensus size: 23
14850 GACAGTCTAG
14860 TATATA-TAT-TACTAT-CTTAC
1 TATATACTATATACTATACTTAC
* *
14880 TATCTTACTATATACTATATTTAC
1 TAT-ATACTATATACTATACTTAC
14904 TATATACTATATA
1 TATATACTATATA
14917 TAGAGTATAT
Statistics
Matches: 30, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
20 3 0.10
21 2 0.07
22 3 0.10
23 15 0.50
24 7 0.23
ACGTcount: A:0.37, C:0.14, G:0.00, T:0.49
Consensus pattern (23 bp):
TATATACTATATACTATACTTAC
Found at i:14903 original size:16 final size:16
Alignment explanation
Indices: 14862--14915 Score: 65
Period size: 16 Copynumber: 3.3 Consensus size: 16
14852 CAGTCTAGTA
*
14862 TATATATTACTATCTTAC
1 TATAT-TTACTAT-ATAC
*
14880 TAT-CTTACTATATAC
1 TATATTTACTATATAC
14895 TATATTTACTATATAC
1 TATATTTACTATATAC
14911 TATAT
1 TATAT
14916 ATAGAGTATA
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
15 6 0.19
16 23 0.72
18 3 0.09
ACGTcount: A:0.35, C:0.15, G:0.00, T:0.50
Consensus pattern (16 bp):
TATATTTACTATATAC
Found at i:15213 original size:16 final size:17
Alignment explanation
Indices: 15176--15213 Score: 55
Period size: 15 Copynumber: 2.4 Consensus size: 17
15166 TTCTACTAAT
15176 TATT-TTTAGATTATAA
1 TATTATTTAGATTATAA
15192 TA-TATTTA-ATTATAA
1 TATTATTTAGATTATAA
15207 TATTATT
1 TATTATT
15214 ATTTATAGTC
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
15 10 0.50
16 10 0.50
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.58
Consensus pattern (17 bp):
TATTATTTAGATTATAA
Found at i:18183 original size:332 final size:331
Alignment explanation
Indices: 16876--19049 Score: 2231
Period size: 332 Copynumber: 6.5 Consensus size: 331
16866 ATCCCAGCCA
* * * * *
16876 TTGTTTTTACAAACATCTGAATCATGTTTC-ATTTTAATTAGAAATTAATTCGGAAAAAAATAGG
1 TTGTTTTTACGAGCATCTGAATCTTGTTTCGA-TTTAATTAGAAATTAATTC--AGAAAAATATG
* * * * * * *
16940 AAAAGCGATATTAGAAGCGTGAAAAGCCCTTCAATCTTTTTAGCGTTGAATTATATATTTTTTAT
63 AAAAACGATATTAAAAGCGTGAAAAGTCCTTCAATATTTTTGGAGTTGAATTATATATATTTTAT
* * * * * * * * *
17005 G-GGACTGTGGCTAAAAATTGAGGAAATTTTTATC-TGATCATTTTTTTTGCAAAATTTTAGCTG
128 GAGTATTTTAGCCAAAAATTGAGGAAAATCTT-TCGTG-TCA--ATTTTTGCAAAATTTTAGCCG
* **
17068 AAATCGTGTACTAACCATCACGGTTTTCTTTGCTAAAAACGCGTTTC-GAGGCCCC-GGTTCAGT
189 AAATCGTGTACTAACCATCACGG-TTT-TTGGCTAAAAACGCGTTTCAG-GGCCCCAACTTCAGT
* * * * *
17131 TTTACATGATTTTTCGCGTCGAGACTCCTTGAAATATCTATATTCATCTAATCAAGTATCA-TCC
251 TTTGCATGATTTTTGGCGCCGAGACTCCTTGAAATATCTATATTCATCTAATCAAATCTCAGT-C
* *
17195 AGATTGCATTTAAGGAT
315 ACATTGGATTTAAGGAT
* * *
17212 TTGTTTTTACGTGCATCTGAATCTTGTTTCGGTTTAATTAGAAATTAATTCTAAAAAAAATATGA
1 TTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAATTAATTC--AGAAAAATATGA
* * *
17277 AAAACGATATTAAAAGCGTGAAAAGTCCTCCAATATTTTTTGAGTTGAATTATATATATTTTATA
64 AAAACGATATTAAAAGCGTGAAAAGTCCTTCAATATTTTTGGAGTTGAATTATATATATTTTATG
* * * * *
17342 ATTATTTTAGACAAAAATTGAGAAAAAAATATTTC-TGGTCAATTTTTTGCAAAATATTAGCC-A
129 AGTATTTTAGCCAAAAATTGAG--GAAAATCTTTCGT-GTCAA-TTTTTGCAAAATTTTAGCCGA
* * * * *
17405 ATATCGTGTACGTTAGTCGAAATCACGGTTTTTGGCTAAAAACCCGTTTCTGGG-CCCAAGTTCA
190 A-ATCGTGTAC--TA-AC--CATCACGGTTTTTGGCTAAAAACGCGTTTCAGGGCCCCAACTTCA
* * * * * * * **
17469 ATGTTGCATGATTTTTTGCGCCGAGACTCCTT-AAATATTTACATTCATCTAACCAAATTTCAAC
249 GTTTTGCATGATTTTTGGCGCCGAGACTCCTTGAAATATCTATATTCATCTAATCAAATCTCAGT
*
17533 CAAATTGGATTTAAGGAT
314 CACATTGGATTTAAGGAT
*** * * * * *
17551 TTG-TAAAACAAGCATCTGAATCATGTTTCGATTTAATTAGAAATTAGTTCGGAAAATAATAGGA
1 TTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAATTAATTCAG-AAA-AATATGA
* * *
17615 AAAACGATATTAGAAGCATGAAAAGACCTTCAA-ACTTTTTGGCA-TTGAATTATATA-ATTTTT
64 AAAACGATATTAAAAGCGTGAAAAGTCCTTCAATA-TTTTTGG-AGTTGAATTATATATA-TTTT
* * * * * *
17677 ATGAGTATTGTGGCTAAAAATTGAGGAAATAACTTTCGAGTCAATTTTTGCAAAATTCTAGCCGA
126 ATGAGTATTTTAGCCAAAAATTGAGGAAA-ATCTTTCGTGTCAATTTTTGCAAAATTTTAGCCG-
* * * * ** *
17742 TCAAAATCCTGTAATAATCATCACGGTTTTTGGCTAAAAACGCGTTCCAGGGCCCCGGC-TAAGT
189 ---AAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAACGCGTTTCAGGGCCCCAACTTCAGT
* * * *
17806 TTTGCATGATTTTTGGCGCCAAGACTCCTT-AAGATATCCATATTCATTTAATCAAATCTCAGTT
251 TTTGCATGATTTTTGGCGCCGAGACTCCTTGAA-ATATCTATATTCATCTAATCAAATCTCAGTC
* *
17870 AAATTGGATTTAAGAAT
315 ACATTGGATTTAAGGAT
*
17887 TTGTTTTTACGAGCATCTGAATCTTGCTTCGATTTAATTAGAAATTAATTCAGAAAAATATGAAA
1 TTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAATTAATTCAGAAAAATATGAAA
* * *
17952 AACAATATTAAAAGCTTGAAAAGTCCTCCAATATTTTTGGAGTTGAATTATATATATTTTATGAG
66 AACGATATTAAAAGCGTGAAAAGTCCTTCAATATTTTTGGAGTTGAATTATATATATTTTATGAG
* *
18017 TATTTTAGCCAAAAATTGACGGAATAATTTTTCGTGTCATTTTTTGCAAAATTTTAGCCGAAATC
131 TATTTTAGCCAAAAATTGA-GGAA-AATCTTTCGTGTCAATTTTTGCAAAATTTTAGCCGAAATC
* * *
18082 GTGTACTAACCATCACGGTTTTTTGCTAAAATCGCGTTTTAGGGCCCCAACTT-AGTTTTGCATG
194 GTGTACTAACCATCACGGTTTTTGGCTAAAAACGCGTTTCAGGGCCCCAACTTCAGTTTTGCATG
* *
18146 ATTTTTGGCGCCGAGACTCCTTGAAATATCTATATTCATCTAATCAACTCTCA-TCCACATTGAA
259 ATTTTTGGCGCCGAGACTCCTTGAAATATCTATATTCATCTAATCAAATCTCAGT-CACATTGGA
*
18210 TTGAAGGAT
323 TTTAAGGAT
* *
18219 TTGTTTTTACGAGCATCTGAATTTTGTTTCGATTTAATAAGAAATTAATTCAGAAAAATATG-AA
1 TTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAATTAATTCAGAAAAATATGAAA
* * * * *
18283 AATGATATTAAAAGCGTGAAAAAGGCTTTC-ATTTTTTATGGCA-TTGAATTATATGT-TTTTAT
66 AACGATATTAAAAGCGTG-AAAAGTCCTTCAATATTTT-TGG-AGTTGAATTATATATATTTTAT
* ** * * * *
18345 GAGTATTTTCGTTAAAAATCGAGAAAAAATCTTTCG-GATCAATTTTTCCAAAATTTTAGCCAAA
128 GAGTATTTTAGCCAAAAATTGAG-GAAAATCTTTCGTG-TCAATTTTTGCAAAATTTTAGCCGAA
* * * * * *
18409 ATCGTGTACTAACCATCACGGTTTTCGACTAAAAACGC-TTTCCGGGACCCGA-TTCAGTATTGC
191 ATCGTGTACTAACCATCACGGTTTTTGGCTAAAAACGCGTTTCAGGGCCCCAACTTCAGTTTTGC
* * * *
18472 ATGATTTTTGGTG-C-A-A-TCCTTGAAATATCTATATTCATCTAACCAAATCTCAGACACATTA
256 ATGATTTTTGGCGCCGAGACTCCTTGAAATATCTATATTCATCTAATCAAATCTCAGTCACATTG
18533 GATTTAAGGAT
321 GATTTAAGGAT
* * * *
18544 TTGTTTTTTCGAGCATTTGAATATTGTTTCGATTTAATTAGAAATTAATTC-GAAAAAAATGGAA
1 TTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAATTAATTCAGAAAAATAT-GAA
* * * * * * * *
18608 AAACAATATTAGAAGCGTTAAAAGCCCTTTAATCTTTTT-GATGTCGAATTATATATTTTTTATG
65 AAACGATATTAAAAGCGTGAAAAGTCCTTCAATATTTTTGGA-GTTGAATTATATATATTTTATG
*
18672 AGTATTTTAGCCAAAAATTGAGGAAATATCTTTCGGGTCAATTTTTGCAAAATTTTAGCCGAAAT
129 AGTATTTTAGCCAAAAATTGAGGAAA-ATCTTTCGTGTCAATTTTTGCAAAATTTTAGCCGAAAT
* * * * * * * *
18737 CGTGTACTAACCATCACGGTTTTTGGGTAAAAACGCATTTCAGGACCACAGC-TCTGATTTGAAT
193 CGTGTACTAACCATCACGGTTTTTGGCTAAAAACGCGTTTCAGGGCCCCAACTTCAGTTTTGCAT
* * * *
18801 GATTTTTGGCGCCGAGACTCCTTGAAATATATTTATTCATCTAATAAAATCTCAGGCACATTGGA
258 GATTTTTGGCGCCGAGACTCCTTGAAATATCTATATTCATCTAATCAAATCTCAGTCACATTGGA
18866 TTTAAGGAT
323 TTTAAGGAT
* * *
18875 TTGTTTTTATGTGCATTTGAATCTTGTTTCGATTTAATTAGAAATTAATTCAGAAAAAATATGAA
1 TTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAATTAATTCAG-AAAAATATGAA
* * ** *
18940 AAACGATATTAAAAGCATGAAAAGTCCTCCAATCCTTTTGGTGTTGAATTATATATA-TTTATGA
65 AAACGATATTAAAAGCGTGAAAAGTCCTTCAATATTTTTGGAGTTGAATTATATATATTTTATGA
* *
19004 GTAGTTTT-GCCAAAAAAAATGAGGAAAAATCTTTCGGGT-AATTTTT
130 GTA-TTTTAGCC--AAAAATTGAGG-AAAATCTTTCGTGTCAATTTTT
19050 ACCATCATGG
Statistics
Matches: 1535, Mismatches: 237, Indels: 136
0.80 0.12 0.07
Matches are distributed among these distances:
323 1 0.00
324 9 0.01
325 120 0.08
326 115 0.07
327 28 0.02
328 4 0.00
329 31 0.02
330 67 0.04
331 160 0.10
332 258 0.17
333 33 0.02
334 4 0.00
335 140 0.09
336 216 0.14
337 97 0.06
338 123 0.08
339 57 0.04
340 59 0.04
341 6 0.00
342 7 0.00
ACGTcount: A:0.34, C:0.14, G:0.16, T:0.37
Consensus pattern (331 bp):
TTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAATTAATTCAGAAAAATATGAAA
AACGATATTAAAAGCGTGAAAAGTCCTTCAATATTTTTGGAGTTGAATTATATATATTTTATGAG
TATTTTAGCCAAAAATTGAGGAAAATCTTTCGTGTCAATTTTTGCAAAATTTTAGCCGAAATCGT
GTACTAACCATCACGGTTTTTGGCTAAAAACGCGTTTCAGGGCCCCAACTTCAGTTTTGCATGAT
TTTTGGCGCCGAGACTCCTTGAAATATCTATATTCATCTAATCAAATCTCAGTCACATTGGATTT
AAGGAT
Found at i:24493 original size:19 final size:19
Alignment explanation
Indices: 24469--24507 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
24459 TCTTAAAGAG
24469 ATTGGGATTACAAACGCAC
1 ATTGGGATTACAAACGCAC
24488 ATTGGGATTACAAACGCAC
1 ATTGGGATTACAAACGCAC
24507 A
1 A
24508 AGAAGACCCG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.38, C:0.21, G:0.21, T:0.21
Consensus pattern (19 bp):
ATTGGGATTACAAACGCAC
Done.