Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015557.1 Corchorus olitorius cultivar O-4 contig15590, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  111076

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5428--5529
31
3.3
31
75
14
79
26
13
12
47
1.79
9949--9988
8
4.9
8
96
3
71
10
2
0
87
0.63
10072--10117
21
2.2
21
100
0
92
28
0
30
41
1.56
12970--13157
97
1.9
97
91
5
308
34
18
19
28
1.95
23249--23368
61
2.0
62
93
5
208
28
20
10
40
1.85
24300--24368
35
2.0
35
100
0
138
20
24
14
40
1.90
29490--29682
22
8.9
22
77
11
148
41
9
13
34
1.78
29477--29555
21
3.8
21
75
21
76
51
10
16
21
1.73
30393--31123
361
2.0
364
95
2
1308
40
13
12
33
1.83
36671--36726
3
20.0
3
75
14
57
32
1
33
32
1.69
36671--36722
14
3.7
14
82
7
52
32
1
34
30
1.69
36676--36728
27
2.0
27
88
0
79
32
1
32
33
1.69
37897--37921
13
1.9
13
100
0
50
8
16
0
76
1.02
47279--47309
8
3.9
8
95
0
53
0
0
32
67
0.91
47775--47812
8
5.3
7
90
9
51
81
13
5
0
0.85
51495--51531
14
2.8
13
92
8
58
64
16
18
0
1.29
54045--54087
22
1.9
23
85
4
61
9
20
2
67
1.30
70606--70881
107
2.6
107
89
1
403
39
10
8
41
1.69
85372--85401
15
2.1
14
93
6
51
90
0
10
0
0.47
86484--86759
137
2.0
137
97
0
525
22
5
26
45
1.74
86728--86802
38
2.0
38
97
0
141
17
8
37
37
1.79
89909--89972
21
3.2
20
77
8
67
37
12
18
31
1.88
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
93641--93670
14
2.1
14
93
0
51
43
6
6
43
1.57
95219--95262
23
1.9
23
81
9
54
25
15
0
59
1.37
95761--95794
16
2.1
16
88
0
50
8
17
32
41
1.80
99075--100939
322
5.7
319
77
10
1644
36
15
13
34
1.87
99026--100939
654
2.9
648
79
7
2003
35
15
14
34
1.87
101039--101085
21
2.2
21
85
7
60
44
8
19
27
1.79
100999--101122
22
5.7
22
75
11
94
43
9
15
31
1.79
101140--101196
22
2.6
22
82
0
69
43
14
10
31
1.79
101294--101322
2
14.5
2
100
0
58
48
0
0
51
1.00

Tables:   1

The End!