genome.fa.s15558.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015558.1 Corchorus olitorius cultivar O-4 contig15591, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  40567

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7881--7941	27	2.2	29	83	16	78	47	4	1	45	1.34
10074--10134	12	5.1	12	71	15	54	31	19	4	44	1.72
10073--10134	24	2.6	24	75	14	65	30	19	6	43	1.76
16519--16585	21	3.2	21	64	16	57	50	14	5	28	1.66
16506--16589	42	2.0	42	97	0	159	47	15	7	29	1.72
16652--16762	56	2.0	57	96	1	206	39	1	22	36	1.65
18192--18223	16	1.9	17	93	6	57	28	15	12	43	1.83
22445--22517	37	2.0	37	100	0	146	21	20	16	41	1.90
30071--30116	17	2.6	18	89	3	67	19	21	34	23	1.96
30106--30233	36	3.6	35	86	4	175	15	32	30	21	1.95
30333--30412	33	2.4	33	91	0	133	20	30	23	26	1.98
34488--34529	18	2.3	18	91	0	66	47	14	26	11	1.78
34422--34715	93	3.2	93	95	0	534	36	19	25	18	1.94
34581--34622	18	2.3	18	91	0	66	47	14	26	11	1.78
34581--34632	18	2.9	18	80	11	54	48	15	26	9	1.76
34674--34716	18	2.4	18	92	0	68	48	13	25	11	1.77
34674--34746	24	3.5	21	77	15	71	47	16	23	12	1.80
34692--34737	24	1.9	24	90	0	74	50	13	23	13	1.76
35518--35553	18	2.0	18	100	0	72	27	11	22	38	1.88
36270--36327	29	2.0	30	96	3	109	32	12	6	48	1.67
36542--36622	40	2.0	40	100	0	162	32	19	2	45	1.64
36926--36976	23	2.1	24	89	7	77	35	23	9	31	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37676--37816	24	5.6	24	71	21	110	42	19	26	12	1.86
37733--37779	21	2.4	18	78	18	58	46	12	31	8	1.72
37738--37786	21	2.3	21	96	0	89	44	16	28	10	1.80
37754--37874	30	3.8	30	71	23	95	40	21	22	15	1.91
38960--39029	27	2.5	28	83	2	88	30	12	7	50	1.67

Tables:   1

The End!