Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01015566.1 Corchorus olitorius cultivar O-4 contig15599, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5486
ACGTcount: A:0.31, C:0.16, G:0.20, T:0.33


Found at i:395 original size:15 final size:16

Alignment explanation


    Indices: 375--404  Score: 53
    Period size: 15  Copynumber: 1.9  Consensus size: 16

        365 TATCCTTTTC

                            
        375 TTTCTCT-TGTAACTG
          1 TTTCTCTCTGTAACTG

                           
        390 TTTCTCTCTGTAACT
          1 TTTCTCTCTGTAACT

        405 CTTTGGGAAA


Statistics
Matches: 14,  Mismatches: 0, Indels: 1
        0.93            0.00        0.07

Matches are distributed among these distances:
  15    7  0.50
  16    7  0.50

ACGTcount: A:0.13, C:0.23, G:0.10, T:0.53


Consensus pattern (16 bp):   
TTTCTCTCTGTAACTG

Done.