Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015568.1 Corchorus olitorius cultivar O-4 contig15601, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  65066

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3574--3681
30
3.6
30
81
5
119
50
10
23
15
1.74
7920--8000
33
2.5
33
87
0
108
24
7
23
44
1.79
7947--8048
33
3.1
33
83
8
111
26
5
21
46
1.74
11483--11582
32
3.1
32
78
5
78
16
7
35
42
1.75
11496--11594
32
3.1
32
80
0
108
17
8
32
42
1.78
11737--11775
20
2.0
20
85
10
53
35
5
5
53
1.45
11804--11865
16
3.9
15
74
16
54
8
11
29
51
1.66
12524--12781
106
2.5
104
90
2
392
41
8
8
40
1.68
15267--15321
21
2.7
19
76
15
56
1
27
0
70
0.97
15289--15334
13
3.8
12
81
13
51
4
23
0
71
1.03
15310--15346
16
2.4
16
86
8
51
2
24
0
72
0.97
15453--15541
46
1.9
46
90
0
142
14
37
33
14
1.87
16368--16403
17
2.1
18
94
5
65
61
11
0
27
1.30
19696--19720
13
1.9
13
100
0
50
56
0
0
44
0.99
21648--21706
19
3.0
20
73
16
59
27
10
22
40
1.85
22092--22144
11
4.7
11
80
2
52
66
3
22
7
1.34
22091--22144
23
2.4
23
90
9
85
64
5
22
7
1.40
22106--22146
12
3.5
12
86
6
66
60
4
24
9
1.47
31851--31881
2
15.5
2
93
0
53
54
0
0
45
0.99
32162--32197
4
9.5
4
88
11
58
50
22
0
27
1.50
32770--32818
21
2.4
21
77
16
57
67
6
8
18
1.37
33665--33718
22
2.5
22
96
0
99
12
42
27
16
1.85
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
35489--35525
3
13.0
3
91
5
51
27
0
2
70
1.01
36688--36716
15
1.9
15
100
0
58
0
27
0
72
0.85
41847--41885
7
5.9
7
90
3
55
23
0
2
74
0.94
46345--46374
14
2.1
14
100
0
60
50
6
6
36
1.55
46368--46393
2
13.0
2
100
0
52
50
0
0
50
1.00
47496--47520
1
25.0
1
100
0
50
0
100
0
0
0.00
50206--50285
32
2.5
32
91
0
133
23
26
16
33
1.95
54382--54448
28
2.5
27
90
9
102
16
8
26
47
1.76
55022--55083
29
2.2
29
94
2
108
32
24
8
35
1.85
56837--57104
41
6.6
41
88
1
396
14
31
18
35
1.91
56837--57104
82
3.3
82
93
1
441
14
31
18
35
1.91
56793--57104
123
2.5
122
86
3
408
14
30
18
36
1.91
58086--58132
26
1.9
24
87
12
69
27
27
4
40
1.75
63146--63205
29
2.1
29
100
0
120
23
15
28
33
1.94
64402--65066
41
16.8
40
78
9
628
13
26
19
40
1.89
64834--64938
33
2.9
33
82
15
129
14
21
22
40
1.90
64402--65066
153
4.2
157
77
9
548
13
26
19
40
1.89

Tables:   1

The End!