Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015569.1 Corchorus olitorius cultivar O-4 contig15602, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  68875

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--187
40
4.7
39
83
7
216
11
28
20
39
1.87
1--187
80
2.4
79
86
2
259
11
28
20
39
1.87
48--328
141
2.0
140
83
6
354
12
26
21
39
1.88
235--506
79
3.4
78
79
11
243
11
25
20
43
1.84
190--506
39
8.1
38
80
7
298
11
25
19
43
1.84
191--521
118
2.8
115
81
8
362
11
24
20
42
1.86
5670--5733
27
2.4
27
94
2
112
15
7
29
46
1.74
7373--7411
19
2.1
19
100
0
78
30
15
15
38
1.88
11340--11377
2
19.5
2
89
5
60
50
0
2
47
1.15
11484--11813
43
7.8
43
84
8
410
21
10
25
42
1.85
11482--11813
84
3.9
84
91
4
517
21
10
25
41
1.85
24269--24304
2
18.5
2
88
5
56
50
0
2
47
1.15
24412--24657
43
5.8
43
83
9
299
20
10
27
41
1.84
24413--24657
84
2.9
84
92
1
411
20
10
27
42
1.84
26349--26374
13
2.0
13
100
0
52
76
0
7
15
0.99
29130--29156
2
13.5
2
100
0
54
51
0
48
0
1.00
29992--30031
19
2.2
19
81
4
55
50
0
50
0
1.00
33779--33809
6
5.2
6
96
0
53
45
32
0
22
1.53
39181--39210
12
2.5
12
88
0
51
20
16
0
63
1.31
41604--41669
28
2.5
26
76
13
71
59
15
6
19
1.57
44171--44205
3
11.7
3
87
0
52
40
34
25
0
1.56
44171--44208
15
2.5
15
100
0
76
42
34
23
0
1.55
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44402--44459
21
2.8
21
81
0
71
44
36
15
3
1.63
47464--47525
31
2.0
30
96
3
115
29
3
30
37
1.73
62350--62518
21
7.9
22
70
11
82
36
13
8
42
1.74
64868--64969
51
2.0
52
81
9
120
22
23
13
40
1.90
66870--66957
27
3.3
27
79
3
106
17
17
27
38
1.91
67216--67305
36
2.5
36
98
0
171
34
12
13
40
1.82

Tables:   1

The End!