Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015580.1 Corchorus olitorius cultivar O-4 contig15613, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  48516

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1237--1265
15
1.9
15
100
0
58
48
0
17
34
1.47
1320--1372
14
3.8
14
92
5
81
30
1
0
67
1.01
7613--7652
3
13.3
3
86
0
53
2
0
67
30
1.04
7630--7659
15
2.0
15
93
0
51
6
3
73
16
1.18
12554--12631
25
3.1
25
100
0
156
43
7
0
48
1.31
23637--23722
43
2.1
41
86
6
120
38
24
4
32
1.76
25967--26064
50
2.0
47
88
5
142
39
2
5
53
1.35
26362--26528
21
8.1
21
81
5
198
28
12
23
35
1.92
26358--26491
63
2.1
63
92
0
223
28
12
24
34
1.92
26765--26841
21
3.6
21
96
1
136
37
20
15
25
1.92
26902--26944
21
2.0
21
86
0
59
34
23
13
27
1.93
26800--27045
101
2.4
101
89
3
361
33
22
13
31
1.92
27005--27098
21
4.5
21
70
12
59
34
21
14
29
1.93
26909--27213
163
1.9
163
91
1
504
33
23
13
29
1.93
27166--27229
21
3.0
21
93
0
110
39
25
12
23
1.90
27561--27596
19
1.9
19
88
5
56
16
13
0
69
1.19
31631--31656
3
8.7
3
100
0
52
0
30
0
69
0.89
41458--41495
19
2.0
19
100
0
76
36
5
15
42
1.70
48346--48370
2
12.5
2
100
0
50
52
0
0
48
1.00

Tables:   1

The End!