Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01015582.1 Corchorus olitorius cultivar O-4 contig15615, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2810
ACGTcount: A:0.33, C:0.19, G:0.18, T:0.31


Found at i:527 original size:27 final size:27

Alignment explanation


    Indices: 470--524  Score: 78
    Period size: 26  Copynumber: 2.1  Consensus size: 27

        460 AAAAGTAACT

                                *      
        470 AAGACAAAAAAAAATAAACAGAAATAA
          1 AAGACAAAAAAAAATAAACAAAAATAA

                                        
        497 AAGA-AAAAGAAAAAT-AACAAAAATAA
          1 AAGACAAAA-AAAAATAAACAAAAATAA

              
        523 AA
          1 AA

        525 AGATAAGGGT


Statistics
Matches: 26,  Mismatches: 1, Indels: 3
        0.87            0.03        0.10

Matches are distributed among these distances:
  26   16  0.62
  27   10  0.38

ACGTcount: A:0.80, C:0.05, G:0.07, T:0.07


Consensus pattern (27 bp):   
AAGACAAAAAAAAATAAACAAAAATAA
Done.