Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01015583.1 Corchorus olitorius cultivar O-4 contig15616, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8267
ACGTcount: A:0.32, C:0.20, G:0.17, T:0.31


Found at i:4838 original size:20 final size:21

Alignment explanation


    Indices: 4795--4838  Score: 54
    Period size: 21  Copynumber: 2.1  Consensus size: 21

       4785 GTAAGTGATG

                              ** 
       4795 AAGTAGTGAAATTGATGATTA
          1 AAGTAGTGAAATTGATGAACA

                      *          
       4816 AAGTAGTGAATTTG-TGAACA
          1 AAGTAGTGAAATTGATGAACA

               
       4836 AAG
          1 AAG

       4839 GTAATAGAAG


Statistics
Matches: 20,  Mismatches: 3, Indels: 1
        0.83            0.12        0.04

Matches are distributed among these distances:
  20    7  0.35
  21   13  0.65

ACGTcount: A:0.43, C:0.02, G:0.25, T:0.30


Consensus pattern (21 bp):   
AAGTAGTGAAATTGATGAACA

Found at i:7403 original size:21 final size:21

Alignment explanation


    Indices: 7370--7418  Score: 55
    Period size: 21  Copynumber: 2.3  Consensus size: 21

       7360 AAGAATTGTA

                          **     
       7370 GCTT-CTTGGAAATGGCTCTT
          1 GCTTCCTTGGAAATCCCTCTT

                    *            
       7390 GCTTCCTTTGAAATCCCTCTT
          1 GCTTCCTTGGAAATCCCTCTT

                    
       7411 GCATTCCT
          1 GC-TTCCT

       7419 AAAGCATTGA


Statistics
Matches: 24,  Mismatches: 3, Indels: 2
        0.83            0.10        0.07

Matches are distributed among these distances:
  20    4  0.17
  21   15  0.62
  22    5  0.21

ACGTcount: A:0.14, C:0.29, G:0.16, T:0.41


Consensus pattern (21 bp):   
GCTTCCTTGGAAATCCCTCTT
Done.