Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015585.1 Corchorus olitorius cultivar O-4 contig15618, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  31353

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3819--3939
60
2.0
60
96
0
224
20
10
37
31
1.87
6279--6377
40
2.5
40
96
0
189
25
10
24
40
1.86
9329--9366
19
2.0
19
100
0
76
26
5
21
47
1.71
9923--10020
22
4.4
22
78
7
108
32
18
13
35
1.89
9888--10019
45
3.0
45
81
7
119
31
17
14
36
1.90
9888--10022
67
2.0
67
92
2
227
31
17
14
37
1.89
9943--10069
47
2.8
44
82
7
130
30
17
11
40
1.85
10250--10296
22
2.2
21
85
7
60
34
19
12
34
1.89
14027--14085
30
2.0
30
93
0
100
47
5
23
23
1.71
15500--15529
6
4.8
6
92
8
51
33
0
33
33
1.58
15500--15529
13
2.4
12
94
5
51
33
0
33
33
1.58
25604--25642
14
2.9
14
84
3
53
0
5
7
87
0.68
26001--26136
44
3.1
44
100
0
272
38
13
22
25
1.90
27202--27231
13
2.3
13
100
0
60
36
13
0
50
1.42

Tables:   1

The End!