Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015587.1 Corchorus olitorius cultivar O-4 contig15620, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  44546

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
275--341
30
2.2
29
82
12
82
28
7
47
16
1.73
2411--2465
17
3.2
17
82
10
67
23
21
18
36
1.95
3141--3166
13
2.0
13
100
0
52
23
15
30
30
1.95
3624--3648
2
12.5
2
100
0
50
0
48
0
52
1.00
3690--4149
231
2.0
231
96
0
839
38
10
16
35
1.83
11109--11141
15
2.2
15
94
0
57
57
18
6
18
1.60
14255--14316
2
31.5
2
96
3
117
51
48
0
0
1.00
18666--18715
23
2.2
23
92
0
82
40
14
6
40
1.70
19422--19459
19
2.0
20
89
5
60
15
15
13
55
1.70
22129--22206
38
2.1
38
100
0
156
23
10
19
47
1.79
23471--23533
29
2.2
29
88
0
90
33
14
7
44
1.74
26773--26872
49
2.0
49
100
0
200
16
17
10
57
1.65
29249--29286
18
2.1
18
95
0
67
36
5
26
31
1.79
30087--30256
84
2.0
84
98
0
331
35
14
22
27
1.93
30710--30740
15
2.1
15
100
0
62
19
6
12
61
1.53
32207--32263
3
18.7
3
96
3
105
33
0
0
66
0.92
32332--32366
2
17.5
2
93
0
61
51
0
0
48
1.00
40939--40973
18
2.1
17
89
10
54
54
0
25
20
1.45
40946--40982
17
2.1
18
90
5
58
51
0
27
21
1.48
42509--42539
2
16.0
2
93
6
55
48
0
0
51
1.00
42509--42550
12
3.2
13
90
6
50
47
2
0
50
1.14

Tables:   1

The End!