Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015588.1 Corchorus olitorius cultivar O-4 contig15621, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  37314

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1905--1945
18
2.3
18
100
0
82
14
24
12
48
1.78
3785--3898
56
2.0
56
93
3
194
45
6
13
35
1.68
8486--8536
22
2.2
24
80
16
63
39
0
1
58
1.09
9933--10194
107
2.5
104
85
3
348
42
8
6
41
1.62
12468--12572
51
2.1
51
98
0
201
38
9
11
40
1.74
12679--12719
16
2.6
16
84
3
57
58
0
0
41
0.98
15376--15448
22
3.3
22
86
3
110
39
6
31
21
1.80
15378--15442
23
2.9
23
90
2
96
41
7
26
24
1.82
21250--21307
25
2.3
25
96
0
107
37
5
25
31
1.78
23283--23310
14
2.0
14
100
0
56
50
7
0
42
1.30
25759--25795
2
18.5
2
100
0
74
51
0
0
48
1.00
26867--26900
18
1.9
17
94
5
59
38
0
0
61
0.96
27213--27282
35
2.0
35
97
0
131
44
7
11
37
1.68
27828--27856
14
2.1
14
100
0
58
51
20
0
27
1.47
29877--29939
4
17.2
4
90
6
75
1
25
0
73
0.93
31274--31375
31
3.4
31
84
2
136
16
22
24
36
1.94
37281--37310
2
15.0
2
100
0
60
50
0
0
50
1.00

Tables:   1

The End!