Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015589.1 Corchorus olitorius cultivar O-4 contig15622, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  93389

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2735--2774
2
20.0
2
94
0
71
47
0
52
0
1.00
6970--7005
16
2.3
16
95
4
65
11
11
5
72
1.28
6987--7034
23
2.0
24
84
8
62
4
12
4
79
1.02
11549--11574
2
13.0
2
100
0
52
50
0
0
50
1.00
11574--11608
2
17.5
2
100
0
70
51
48
0
0
1.00
15366--15417
17
3.0
17
75
13
52
5
17
1
75
1.10
15365--15417
18
3.0
18
76
15
56
5
16
1
75
1.08
20835--20860
13
2.0
13
100
0
52
15
0
0
84
0.62
23322--23448
65
1.9
66
91
1
211
51
4
22
22
1.66
24658--24697
21
1.9
21
85
10
55
32
22
27
17
1.96
30290--30338
24
2.0
25
84
4
64
18
6
6
69
1.31
31143--31188
22
2.1
22
84
8
58
30
19
23
26
1.98
34715--34748
16
2.1
16
89
10
52
14
0
5
79
0.91
40885--41285
220
1.8
221
90
1
653
21
23
12
41
1.88
46998--47058
28
2.2
28
82
11
72
31
14
14
39
1.87
47853--47909
28
2.0
29
96
3
107
17
17
17
47
1.83
48158--48183
13
2.0
13
100
0
52
15
15
15
53
1.73
50649--50683
18
2.0
17
94
5
61
77
0
22
0
0.78
53923--54015
40
2.4
39
78
5
98
33
13
22
30
1.93
58998--59110
62
1.9
58
89
7
172
25
9
25
38
1.86
59280--59450
44
3.9
44
90
1
281
24
23
9
42
1.84
61596--61742
73
2.0
73
94
2
260
51
19
5
23
1.67
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
61786--61916
65
2.0
65
85
5
176
42
12
18
26
1.85
65203--65350
74
2.0
73
90
3
235
47
18
8
25
1.75
65411--65508
33
3.1
33
65
11
96
41
15
18
24
1.89
65394--65513
62
1.9
62
93
3
206
44
14
16
25
1.85
67225--67266
21
2.0
21
95
0
75
30
28
16
23
1.96
71868--71957
40
2.2
39
80
18
96
47
16
14
21
1.82
81467--81764
148
2.0
148
98
0
578
32
15
15
35
1.89
82292--82436
73
2.0
72
87
2
211
48
20
6
24
1.73
86714--86741
2
14.0
2
100
0
56
50
0
0
50
1.00

Tables:   1

The End!