genome.fa.s15590.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015590.1 Corchorus olitorius cultivar O-4 contig15623, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  117546

Tables:   1   

This is table  1  of  1  ( 74 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2663--2702	12	3.1	12	80	19	53	32	7	25	35	1.84
2667--2706	15	2.7	15	100	0	80	32	5	27	35	1.79
11569--12016	151	2.9	155	83	7	518	29	18	22	29	1.97
13842--13880	15	2.6	15	100	0	78	48	5	7	38	1.54
17192--18077	14	62.0	14	65	23	219	45	4	20	29	1.72
17182--18080	44	20.9	44	71	18	623	45	4	20	29	1.72
17182--17598	22	19.1	22	81	12	175	46	5	20	28	1.71
17627--17680	23	2.4	23	87	3	74	46	1	20	31	1.61
17704--17936	22	10.2	22	71	14	134	46	3	19	30	1.68
17626--17845	104	2.1	104	86	5	309	45	4	19	30	1.70
17855--18078	8	29.9	8	71	20	67	43	4	22	30	1.71
17627--18076	243	1.9	243	94	0	803	44	4	20	30	1.71
17716--17972	139	1.9	138	90	2	417	45	4	19	30	1.69
17947--18078	22	5.9	21	77	13	122	43	3	23	29	1.71
17248--17691	22	20.2	22	81	9	400	45	5	20	28	1.72
19756--19789	7	4.9	7	85	0	50	5	14	0	79	0.91
22589--22685	48	2.0	48	93	0	167	30	15	9	44	1.78
25697--25882	35	4.9	35	82	13	169	50	2	22	25	1.62
25693--25873	76	2.5	71	82	7	195	49	2	22	25	1.61
25665--25881	14	15.5	14	65	20	71	50	2	22	24	1.61
25893--26080	36	5.3	35	71	17	115	48	1	19	30	1.58
25904--26005	31	3.1	31	80	12	132	51	0	16	30	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25904--26038	67	2.0	67	87	5	193	49	1	17	31	1.56
26097--26398	35	8.5	34	70	16	159	49	2	18	30	1.61
26103--26169	33	2.2	30	80	15	82	49	2	13	34	1.57
26097--26246	70	2.2	67	84	7	185	49	2	17	31	1.58
26198--26289	43	2.1	43	80	6	96	51	1	15	32	1.51
29038--29070	2	16.5	2	100	0	66	48	0	0	51	1.00
29772--29874	39	2.7	39	89	4	147	27	15	6	50	1.69
36689--36733	14	3.5	12	84	9	54	31	0	11	57	1.33
42093--42134	15	2.7	15	92	3	66	64	14	9	11	1.50
42894--42919	11	2.4	11	100	0	52	69	7	15	7	1.35
44517--44558	22	1.9	22	100	0	84	4	19	61	14	1.49
46196--46240	6	7.0	6	85	14	63	80	2	0	17	0.82
46200--46231	15	2.1	15	94	0	55	78	3	0	18	0.89
46453--46491	20	2.0	20	89	0	60	61	5	5	28	1.39
53415--53446	14	2.2	14	94	5	55	84	15	0	0	0.63
53822--53987	83	2.0	84	93	2	289	27	12	8	51	1.69
54862--54958	48	2.0	48	91	0	158	30	14	11	43	1.81
58286--58488	41	5.2	40	83	11	194	48	3	24	23	1.68
58315--58497	35	5.1	35	80	9	206	48	4	23	24	1.69
58286--58488	76	2.7	75	81	7	230	48	3	24	23	1.68
58401--58474	14	5.4	13	74	18	53	47	2	22	27	1.65
58287--58503	111	1.9	112	85	2	303	48	4	23	23	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58408--58482	21	3.6	21	74	16	84	45	4	22	28	1.70
58522--59024	35	13.8	36	70	16	256	49	1	18	30	1.56
58518--58621	32	3.1	32	78	9	127	52	0	15	30	1.49
58518--58654	68	2.0	68	85	5	188	50	1	16	31	1.54
58712--58956	33	7.2	33	84	6	251	49	1	17	31	1.56
58707--59028	35	9.1	35	76	15	272	49	1	18	31	1.55
58707--58956	65	3.7	68	84	8	305	50	1	18	30	1.56
58725--59050	114	3.1	107	81	10	325	47	1	18	32	1.58
58967--59057	34	2.7	34	78	13	89	47	2	18	31	1.61
59713--59739	1	27.0	1	100	0	54	100	0	0	0	0.00
59735--59822	40	2.2	39	89	2	140	37	15	15	30	1.90
59801--59844	23	2.0	22	90	4	70	40	9	15	34	1.79
62958--62986	14	2.1	14	100	0	58	31	6	13	48	1.69
63941--63974	2	16.5	2	93	6	59	50	0	2	47	1.16
66619--66648	2	15.5	2	93	6	53	50	0	0	50	1.00
67429--67502	3	24.3	3	97	2	139	33	0	0	66	0.92
69954--70208	131	2.0	123	87	7	368	36	11	1	50	1.48
74022--74081	27	2.3	27	94	2	104	35	3	13	48	1.59
74098--74132	12	2.9	12	95	0	61	17	22	25	34	1.96
75067--75107	16	2.6	16	78	17	50	14	17	26	41	1.88
96824--96864	21	2.0	20	85	4	55	70	9	7	12	1.33
100679--100711	12	2.8	12	95	0	57	24	9	18	48	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
102519--102543	2	12.5	2	100	0	50	48	0	0	52	1.00
102919--102957	1	39.0	1	84	0	51	92	0	7	0	0.39
102915--102959	6	7.8	6	92	5	67	88	0	11	0	0.50
104640--104669	13	2.3	13	94	0	51	23	13	0	63	1.29
105231--105256	1	26.0	1	100	0	52	0	0	0	100	0.00
105320--105530	104	2.0	104	99	0	413	22	27	10	39	1.86
114541--114612	36	2.0	36	88	0	108	52	1	31	13	1.49
115666--115712	3	15.7	3	86	0	67	61	4	0	34	1.15

Tables:   1

The End!