Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01015592.1 Corchorus olitorius cultivar O-4 contig15625, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 49973
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Found at i:1121 original size:70 final size:70
Alignment explanation
Indices: 1037--1176 Score: 262
Period size: 70 Copynumber: 2.0 Consensus size: 70
1027 ACCTGCTTAC
*
1037 TCTCATCTTAAATTCTTAATAATAAATTCTTAAATCTTCAATTTTGTAATTTTTAAAATATTTTT
1 TCTCACCTTAAATTCTTAATAATAAATTCTTAAATCTTCAATTTTGTAATTTTTAAAATATTTTT
1102 CATGT
66 CATGT
*
1107 TCTCACCTTAAATTCTTAATAGTAAATTCTTAAATCTTCAATTTTGTAATTTTTAAAATATTTTT
1 TCTCACCTTAAATTCTTAATAATAAATTCTTAAATCTTCAATTTTGTAATTTTTAAAATATTTTT
1172 CATGT
66 CATGT
1177 CTATTCAAAA
Statistics
Matches: 68, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
70 68 1.00
ACGTcount: A:0.34, C:0.12, G:0.04, T:0.51
Consensus pattern (70 bp):
TCTCACCTTAAATTCTTAATAATAAATTCTTAAATCTTCAATTTTGTAATTTTTAAAATATTTTT
CATGT
Found at i:6673 original size:32 final size:32
Alignment explanation
Indices: 6619--6683 Score: 112
Period size: 32 Copynumber: 2.0 Consensus size: 32
6609 ATGTCATTTT
*
6619 TAGCACTTAGGTTTTAGTTGATTTATCGTGCA
1 TAGCACTTAGGTTTTAGTTGATTCATCGTGCA
*
6651 TAGCACTTAGGTTTTAGTTGATTCATCTTGCA
1 TAGCACTTAGGTTTTAGTTGATTCATCGTGCA
6683 T
1 T
6684 GTGCGTAGGT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.22, C:0.14, G:0.20, T:0.45
Consensus pattern (32 bp):
TAGCACTTAGGTTTTAGTTGATTCATCGTGCA
Found at i:10289 original size:23 final size:23
Alignment explanation
Indices: 10235--10284 Score: 77
Period size: 23 Copynumber: 2.3 Consensus size: 23
10225 TGGGAGAGGG
*
10235 TTTTTTGGTGTGAACAAACTTAT
1 TTTTTTGGTGTGAAAAAACTTAT
10258 TTTTTTGGTG-GAAAAAACTT-T
1 TTTTTTGGTGTGAAAAAACTTAT
10279 TTTTTT
1 TTTTTT
10285 CTGGTATTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
21 7 0.27
22 9 0.35
23 10 0.38
ACGTcount: A:0.24, C:0.06, G:0.16, T:0.54
Consensus pattern (23 bp):
TTTTTTGGTGTGAAAAAACTTAT
Found at i:15541 original size:21 final size:20
Alignment explanation
Indices: 15508--15555 Score: 53
Period size: 21 Copynumber: 2.4 Consensus size: 20
15498 AATTCCCATC
15508 AAAAAAG-GAAAAAAAAAGAA
1 AAAAAAGTG-AAAAAAAAGAA
* *
15528 AAAGAAAGTGAAAAGAATGAA
1 AAA-AAAGTGAAAAAAAAGAA
15549 AAAAAAG
1 AAAAAAG
15556 AGAGAGAAAG
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
20 7 0.29
21 16 0.67
22 1 0.04
ACGTcount: A:0.77, C:0.00, G:0.19, T:0.04
Consensus pattern (20 bp):
AAAAAAGTGAAAAAAAAGAA
Found at i:16386 original size:22 final size:21
Alignment explanation
Indices: 16361--16417 Score: 53
Period size: 20 Copynumber: 2.6 Consensus size: 21
16351 AAGGTGAAAG
* *
16361 GTTTGTCCAAAAAGAAGAAATT
1 GTTT-TCCAAAAAGAAAAAAAT
*
16383 GTTTTTC-AAAAGAAAAAAAT
1 GTTTTCCAAAAAGAAAAAAAT
16403 GTTTTTCTCAAAAAG
1 G-TTTTC-CAAAAAG
16418 GGTTTTTAGA
Statistics
Matches: 28, Mismatches: 4, Indels: 5
0.76 0.11 0.14
Matches are distributed among these distances:
20 12 0.43
21 6 0.21
22 5 0.18
23 5 0.18
ACGTcount: A:0.46, C:0.09, G:0.14, T:0.32
Consensus pattern (21 bp):
GTTTTCCAAAAAGAAAAAAAT
Found at i:16395 original size:20 final size:20
Alignment explanation
Indices: 16370--16409 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
16360 GGTTTGTCCA
* *
16370 AAAAGAAGAAATTGTTTTTC
1 AAAAGAAAAAAATGTTTTTC
16390 AAAAGAAAAAAATGTTTTTC
1 AAAAGAAAAAAATGTTTTTC
16410 TCAAAAAGGG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.50, C:0.05, G:0.12, T:0.33
Consensus pattern (20 bp):
AAAAGAAAAAAATGTTTTTC
Found at i:17803 original size:16 final size:16
Alignment explanation
Indices: 17784--17834 Score: 68
Period size: 16 Copynumber: 3.2 Consensus size: 16
17774 AACCCGCCCA
17784 ACCCAAGACCCGAATG
1 ACCCAAGACCCGAATG
* *
17800 ACCCATA-ACCTGAGTG
1 ACCCA-AGACCCGAATG
17816 ACCCAAGACCCGAATG
1 ACCCAAGACCCGAATG
17832 ACC
1 ACC
17835 TGTTACCCAA
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
15 1 0.03
16 27 0.93
17 1 0.03
ACGTcount: A:0.35, C:0.37, G:0.18, T:0.10
Consensus pattern (16 bp):
ACCCAAGACCCGAATG
Found at i:17825 original size:23 final size:21
Alignment explanation
Indices: 17790--17852 Score: 54
Period size: 23 Copynumber: 2.7 Consensus size: 21
17780 CCCAACCCAA
17790 GACCCGAATGACCCATAACCTGAGT
1 GACCC-AA-GACCCATAACCT--GT
*
17815 GACCCAAGACCCGAATGACCTGT
1 GACCCAAGACCC--ATAACCTGT
*
17838 TACCCAAGACCCATA
1 GACCCAAGACCCATA
17853 TGACCTGAAA
Statistics
Matches: 33, Mismatches: 3, Indels: 8
0.75 0.07 0.18
Matches are distributed among these distances:
21 2 0.06
23 18 0.55
24 2 0.06
25 11 0.33
ACGTcount: A:0.33, C:0.35, G:0.17, T:0.14
Consensus pattern (21 bp):
GACCCAAGACCCATAACCTGT
Found at i:17855 original size:23 final size:23
Alignment explanation
Indices: 17816--17859 Score: 72
Period size: 23 Copynumber: 1.9 Consensus size: 23
17806 AACCTGAGTG
17816 ACCCAAGACCCGAATGACCTGTT
1 ACCCAAGACCCGAATGACCTGTT
17839 ACCCAAGACCC-ATATGACCTG
1 ACCCAAGACCCGA-ATGACCTG
17860 AAACCCGAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 1 0.05
23 19 0.95
ACGTcount: A:0.32, C:0.36, G:0.16, T:0.16
Consensus pattern (23 bp):
ACCCAAGACCCGAATGACCTGTT
Found at i:17865 original size:23 final size:23
Alignment explanation
Indices: 17816--17865 Score: 66
Period size: 23 Copynumber: 2.2 Consensus size: 23
17806 AACCTGAGTG
**
17816 ACCCAAGACCCGAATGACCTGTT
1 ACCCAAGACCCGAATGACCTGAA
17839 ACCCAAGACCC-ATATGACCTGAA
1 ACCCAAGACCCGA-ATGACCTGAA
17862 ACCC
1 ACCC
17866 GAATAACCCG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
22 1 0.04
23 23 0.96
ACGTcount: A:0.34, C:0.38, G:0.14, T:0.14
Consensus pattern (23 bp):
ACCCAAGACCCGAATGACCTGAA
Found at i:18647 original size:15 final size:15
Alignment explanation
Indices: 18629--18696 Score: 57
Period size: 16 Copynumber: 4.4 Consensus size: 15
18619 AACTCGCCCA
*
18629 ACCCGAGACCGAATG
1 ACCCGAAACCGAATG
* *
18644 ACCCTAAACCCGAATA
1 ACCCGAAA-CCGAATG
*
18660 ACCC-AAACCCAGATG
1 ACCCGAAACCGA-ATG
*
18675 ACTCGAAACACGAATG
1 ACCCGAAAC-CGAATG
18691 ACCCGA
1 ACCCGA
18697 GAAAATGCCT
Statistics
Matches: 41, Mismatches: 8, Indels: 7
0.73 0.14 0.12
Matches are distributed among these distances:
14 3 0.07
15 14 0.34
16 22 0.54
17 2 0.05
ACGTcount: A:0.40, C:0.35, G:0.16, T:0.09
Consensus pattern (15 bp):
ACCCGAAACCGAATG
Found at i:18663 original size:31 final size:32
Alignment explanation
Indices: 18628--18698 Score: 74
Period size: 31 Copynumber: 2.3 Consensus size: 32
18618 GAACTCGCCC
* * *
18628 AACCCGAGACCGA-ATGACCCTAAACCCGAAT
1 AACCCGAGACCCAGATGACCCGAAACACGAAT
* *
18659 AACCC-AAACCCAGATGACTCGAAACACGAAT
1 AACCCGAGACCCAGATGACCCGAAACACGAAT
*
18690 GACCCGAGA
1 AACCCGAGA
18699 AAATGCCTGA
Statistics
Matches: 31, Mismatches: 7, Indels: 3
0.76 0.17 0.07
Matches are distributed among these distances:
30 5 0.16
31 24 0.77
32 2 0.06
ACGTcount: A:0.41, C:0.34, G:0.17, T:0.08
Consensus pattern (32 bp):
AACCCGAGACCCAGATGACCCGAAACACGAAT
Found at i:22806 original size:29 final size:29
Alignment explanation
Indices: 22754--22829 Score: 82
Period size: 29 Copynumber: 2.6 Consensus size: 29
22744 CTTTGACATG
** * *
22754 AGTGCA-AACCCACACTCAAAACAATCCCA
1 AGTGCACAACCCACACT-TGAACAAACACA
*
22783 AGTGTACAACCCACACTTGAACAAACACA
1 AGTGCACAACCCACACTTGAACAAACACA
*
22812 AGTGCACAACCCGCACTT
1 AGTGCACAACCCACACTT
22830 AAAATAATTC
Statistics
Matches: 39, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
29 29 0.74
30 10 0.26
ACGTcount: A:0.41, C:0.36, G:0.11, T:0.13
Consensus pattern (29 bp):
AGTGCACAACCCACACTTGAACAAACACA
Found at i:30820 original size:33 final size:32
Alignment explanation
Indices: 30737--30918 Score: 135
Period size: 30 Copynumber: 5.8 Consensus size: 32
30727 TAATAGTGTA
* *
30737 TATGACAACATCTTGTGTCAATT-GAATAAAAT
1 TATGACAACTTCTGGTGTCAATTGGAA-AAAAT
* ** **
30769 TATGACATCTTCAAGTGTCAATTGGAAATTTAT
1 TATGACAACTTCTGGTGTCAATTGGAAA-AAAT
* *
30802 TATGACAACTTCTGGTGTCAATTGTAAGAACA-
1 TATGACAACTTCTGGTGTCAATTGGAA-AAAAT
* *
30834 T-TGACAACTTCTGGTGTCAATT-G-TAAGAT
1 TATGACAACTTCTGGTGTCAATTGGAAAAAAT
* * *
30863 CATGACAACTTCTGGTGTCAATT-G-TAAGAT
1 TATGACAACTTCTGGTGTCAATTGGAAAAAAT
* * *
30893 CATGACAACTTTTGGTGTCATTTGGA
1 TATGACAACTTCTGGTGTCAATTGGA
30919 GAGTAAAATA
Statistics
Matches: 125, Mismatches: 18, Indels: 14
0.80 0.11 0.09
Matches are distributed among these distances:
28 3 0.02
30 49 0.39
31 22 0.18
32 21 0.17
33 29 0.23
34 1 0.01
ACGTcount: A:0.32, C:0.14, G:0.18, T:0.36
Consensus pattern (32 bp):
TATGACAACTTCTGGTGTCAATTGGAAAAAAT
Found at i:30871 original size:30 final size:30
Alignment explanation
Indices: 30803--30912 Score: 193
Period size: 30 Copynumber: 3.6 Consensus size: 30
30793 GAAATTTATT
*
30803 ATGACAACTTCTGGTGTCAATTGTAAGAAC
1 ATGACAACTTCTGGTGTCAATTGTAAGATC
30833 ATTGACAACTTCTGGTGTCAATTGTAAGATC
1 A-TGACAACTTCTGGTGTCAATTGTAAGATC
30864 ATGACAACTTCTGGTGTCAATTGTAAGATC
1 ATGACAACTTCTGGTGTCAATTGTAAGATC
*
30894 ATGACAACTTTTGGTGTCA
1 ATGACAACTTCTGGTGTCA
30913 TTTGGAGAGT
Statistics
Matches: 77, Mismatches: 2, Indels: 2
0.95 0.02 0.02
Matches are distributed among these distances:
30 48 0.62
31 29 0.38
ACGTcount: A:0.30, C:0.16, G:0.20, T:0.34
Consensus pattern (30 bp):
ATGACAACTTCTGGTGTCAATTGTAAGATC
Found at i:40683 original size:31 final size:31
Alignment explanation
Indices: 40612--40683 Score: 78
Period size: 31 Copynumber: 2.3 Consensus size: 31
40602 GTCTATCAGC
*
40612 TTTTAATTTGTTTAATTTAAGACTTTCATTT
1 TTTTAATTTGTTTAATTTAAGACTTTAATTT
*
40643 TAATT-ATTTGTTTAATTTAATG-C-TTAATTT
1 T-TTTAATTTGTTTAATTTAA-GACTTTAATTT
40673 GTTTTAATTTG
1 -TTTTAATTTG
40684 CAATAATTTA
Statistics
Matches: 34, Mismatches: 3, Indels: 8
0.76 0.07 0.18
Matches are distributed among these distances:
30 8 0.24
31 23 0.68
32 3 0.09
ACGTcount: A:0.26, C:0.04, G:0.08, T:0.61
Consensus pattern (31 bp):
TTTTAATTTGTTTAATTTAAGACTTTAATTT
Found at i:40971 original size:8 final size:8
Alignment explanation
Indices: 40958--40991 Score: 61
Period size: 8 Copynumber: 4.4 Consensus size: 8
40948 AATAATGTTA
40958 TATTATAT
1 TATTATAT
40966 TATTATAT
1 TATTATAT
40974 TATTATAT
1 TATTATAT
40982 TA-TATAT
1 TATTATAT
40989 TAT
1 TAT
40992 CAATAAACTT
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
7 7 0.28
8 18 0.72
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (8 bp):
TATTATAT
Found at i:40973 original size:13 final size:13
Alignment explanation
Indices: 40955--40991 Score: 51
Period size: 13 Copynumber: 2.9 Consensus size: 13
40945 GATAATAATG
40955 TTATATTA-TATTA
1 TTATATTATTA-TA
40968 TTATATTATTATA
1 TTATATTATTATA
40981 TTATA-TATTAT
1 TTATATTATTAT
40992 CAATAAACTT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
12 6 0.26
13 15 0.65
14 2 0.09
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (13 bp):
TTATATTATTATA
Found at i:41080 original size:165 final size:167
Alignment explanation
Indices: 40887--41218 Score: 632
Period size: 165 Copynumber: 2.0 Consensus size: 167
40877 GAGACTGTTC
40887 TTTCGCTATTAATAATTTGTTAGTAATTTTTAACAATTATTCAATCTTTATATATATTGATAATA
1 TTTCGCTATTAATAATTTGTTAGTAATTTTTAACAATTATTCAATCTTTATATATATTGATAATA
40952 ATGTTATATTATATTATTATATTATTATATTATATATTATCAATAAACTTATAATATAAAAGATA
66 ATGTTATATTATATTATTATATTATTATATTATATATTATCAATAAACTTATAATATAAAAGATA
* *
41017 AAACAATTA-TTTTATTT-AAAAATTTTTTAAAAAGA
131 AAACAATTATTTTTATTTAAAAAAATCTTTAAAAAGA
41052 TTTCGCTATTAATAATTTGTTAGTAATTTTTAACAATTATTCAATCTTTATATATATTGATAATA
1 TTTCGCTATTAATAATTTGTTAGTAATTTTTAACAATTATTCAATCTTTATATATATTGATAATA
41117 ATGTTATATTATATTATTATATTATTATATTATATATTATCAATAAACTTATAATATAAAAGATA
66 ATGTTATATTATATTATTATATTATTATATTATATATTATCAATAAACTTATAATATAAAAGATA
41182 AAACAATTATTTTTATTTAAAAAAATCTTTAAAAAGA
131 AAACAATTATTTTTATTTAAAAAAATCTTTAAAAAGA
41219 GCTTACACTT
Statistics
Matches: 163, Mismatches: 2, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
165 139 0.85
166 8 0.05
167 16 0.10
ACGTcount: A:0.43, C:0.05, G:0.04, T:0.47
Consensus pattern (167 bp):
TTTCGCTATTAATAATTTGTTAGTAATTTTTAACAATTATTCAATCTTTATATATATTGATAATA
ATGTTATATTATATTATTATATTATTATATTATATATTATCAATAAACTTATAATATAAAAGATA
AAACAATTATTTTTATTTAAAAAAATCTTTAAAAAGA
Found at i:41136 original size:8 final size:8
Alignment explanation
Indices: 41123--41156 Score: 61
Period size: 8 Copynumber: 4.4 Consensus size: 8
41113 AATAATGTTA
41123 TATTATAT
1 TATTATAT
41131 TATTATAT
1 TATTATAT
41139 TATTATAT
1 TATTATAT
41147 TA-TATAT
1 TATTATAT
41154 TAT
1 TAT
41157 CAATAAACTT
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
7 7 0.28
8 18 0.72
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (8 bp):
TATTATAT
Found at i:41138 original size:13 final size:13
Alignment explanation
Indices: 41120--41156 Score: 51
Period size: 13 Copynumber: 2.9 Consensus size: 13
41110 GATAATAATG
41120 TTATATTA-TATTA
1 TTATATTATTA-TA
41133 TTATATTATTATA
1 TTATATTATTATA
41146 TTATA-TATTAT
1 TTATATTATTAT
41157 CAATAAACTT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
12 6 0.26
13 15 0.65
14 2 0.09
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (13 bp):
TTATATTATTATA
Found at i:41315 original size:23 final size:23
Alignment explanation
Indices: 41289--41339 Score: 75
Period size: 23 Copynumber: 2.2 Consensus size: 23
41279 CAAACTCGAG
*
41289 CCCGAACCCGACCCGAGCCCGAA
1 CCCGAACCCGACCCGAGACCGAA
* *
41312 CCCGAACCCTACTCGAGACCGAA
1 CCCGAACCCGACCCGAGACCGAA
41335 CCCGA
1 CCCGA
41340 CATAACCCGA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.27, C:0.49, G:0.20, T:0.04
Consensus pattern (23 bp):
CCCGAACCCGACCCGAGACCGAA
Found at i:41363 original size:16 final size:16
Alignment explanation
Indices: 41330--41404 Score: 98
Period size: 16 Copynumber: 4.7 Consensus size: 16
41320 CTACTCGAGA
*
41330 CCGAACCCG-ACATAAC
1 CCGAACCCGAAAAT-AC
41346 CCGAACCCGAAAATAC
1 CCGAACCCGAAAATAC
**
41362 CCGATTCCGAAAATAC
1 CCGAACCCGAAAATAC
*
41378 CCGAGCCCGAAAATAC
1 CCGAACCCGAAAATAC
41394 CCGAACCCGAA
1 CCGAACCCGAA
41405 CCCGCCCGAG
Statistics
Matches: 52, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
16 49 0.94
17 3 0.06
ACGTcount: A:0.39, C:0.39, G:0.15, T:0.08
Consensus pattern (16 bp):
CCGAACCCGAAAATAC
Found at i:41413 original size:32 final size:32
Alignment explanation
Indices: 41330--41418 Score: 90
Period size: 32 Copynumber: 2.8 Consensus size: 32
41320 CTACTCGAGA
* *
41330 CCGAACCCGACATA-ACCCGAACCCGAAAATAC
1 CCGAACCCGA-AAACACCCGAGCCCGAAAATAC
** *
41362 CCGATTCCGAAAATACCCGAGCCCGAAAATAC
1 CCGAACCCGAAAACACCCGAGCCCGAAAATAC
** *
41394 CCGAACCCGAACCCGCCCGAGCCCG
1 CCGAACCCGAAAACACCCGAGCCCG
41419 CCCAATTGCC
Statistics
Matches: 46, Mismatches: 10, Indels: 2
0.79 0.17 0.03
Matches are distributed among these distances:
31 2 0.04
32 44 0.96
ACGTcount: A:0.34, C:0.43, G:0.17, T:0.07
Consensus pattern (32 bp):
CCGAACCCGAAAACACCCGAGCCCGAAAATAC
Found at i:42759 original size:29 final size:29
Alignment explanation
Indices: 42692--42768 Score: 104
Period size: 28 Copynumber: 2.7 Consensus size: 29
42682 AGGGTCATAT
** *
42692 AGGGGCATTTTGGGTCA-TTTCCATGTTC
1 AGGGGCATTTTTCGTCATTTTCCACGTTC
*
42720 AGGGGCATTTTT-GTCATTTTGCACGTTC
1 AGGGGCATTTTTCGTCATTTTCCACGTTC
42748 AGGGGCATTTTTCGTCATTTT
1 AGGGGCATTTTTCGTCATTTT
42769 AAGTTCACTT
Statistics
Matches: 44, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
27 4 0.09
28 32 0.73
29 8 0.18
ACGTcount: A:0.14, C:0.17, G:0.26, T:0.43
Consensus pattern (29 bp):
AGGGGCATTTTTCGTCATTTTCCACGTTC
Done.