Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01015593.1 Corchorus olitorius cultivar O-4 contig15626, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1816
ACGTcount: A:0.35, C:0.19, G:0.13, T:0.33


Found at i:541 original size:18 final size:18

Alignment explanation


    Indices: 518--555  Score: 58
    Period size: 18  Copynumber: 2.1  Consensus size: 18

        508 CTCCTCTATC

                     *        
        518 ATGAAAACACTTCTTTTT
          1 ATGAAAACAATTCTTTTT

                        *     
        536 ATGAAAACAATTTTTTTT
          1 ATGAAAACAATTCTTTTT

              
        554 AT
          1 AT

        556 TACCCTTTTA


Statistics
Matches: 18,  Mismatches: 2, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  18   18  1.00

ACGTcount: A:0.37, C:0.11, G:0.05, T:0.47


Consensus pattern (18 bp):   
ATGAAAACAATTCTTTTT
Done.