Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01015594.1 Corchorus olitorius cultivar O-4 contig15627, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8716
ACGTcount: A:0.31, C:0.18, G:0.20, T:0.31


Found at i:3512 original size:5 final size:6

Alignment explanation


    Indices: 3495--3519  Score: 50
    Period size: 6  Copynumber: 4.2  Consensus size: 6

       3485 AATCTAATAT

                                         
       3495 AGAAAA AGAAAA AGAAAA AGAAAA A
          1 AGAAAA AGAAAA AGAAAA AGAAAA A

       3520 TAATACACAA


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   19  1.00

ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00


Consensus pattern (6 bp):   
AGAAAA

Found at i:8419 original size:16 final size:17

Alignment explanation


    Indices: 8394--8441  Score: 57
    Period size: 16  Copynumber: 2.9  Consensus size: 17

       8384 TAAATTTTTC

                             
       8394 TTAC-TAATTTTTAATT
          1 TTACTTAATTTTTAATT

                             
       8410 TT-CTTAATTTTT-ATT
          1 TTACTTAATTTTTAATT

                             
       8425 TTACTTAGAATTTTTAA
          1 TTACTT--AATTTTTAA

       8442 ATTTGGTGTA


Statistics
Matches: 27,  Mismatches: 0, Indels: 7
        0.79            0.00        0.21

Matches are distributed among these distances:
  15    6  0.22
  16   13  0.48
  18    7  0.26
  19    1  0.04

ACGTcount: A:0.29, C:0.06, G:0.02, T:0.62


Consensus pattern (17 bp):   
TTACTTAATTTTTAATT
Done.