Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015595.1 Corchorus olitorius cultivar O-4 contig15628, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  11654

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2051--2082
10
3.1
11
82
17
50
6
21
0
71
1.07
5971--6034
32
2.0
32
84
0
83
43
17
17
21
1.87
6307--6391
26
3.3
26
80
6
100
27
23
9
40
1.85
6389--7163
50
15.4
49
75
12
440
25
26
10
37
1.89
6673--6804
27
5.2
26
66
17
98
26
27
11
34
1.91
6877--7010
27
5.3
27
67
15
79
23
25
12
38
1.90
6426--7150
204
3.6
199
78
10
629
25
26
10
37
1.89
7317--7446
40
3.3
39
68
8
111
30
17
11
40
1.85
7317--7465
80
1.9
78
87
2
217
29
18
10
41
1.84
7478--8112
67
9.5
65
71
10
216
30
23
10
35
1.88
7606--8319
67
10.7
67
73
7
406
30
22
11
36
1.89
7476--7978
200
2.5
200
78
8
461
30
23
10
36
1.88
7537--8240
133
5.3
133
73
7
462
30
23
10
35
1.89
7537--8307
266
2.9
266
86
3
980
29
22
10
36
1.89
11267--11314
2
23.5
2
91
4
78
50
2
2
45
1.25

Tables:   1

The End!