Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000156.1 Corchorus olitorius cultivar O-4 contig00156, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 682

Length: 1138
ACGTcount: A:0.32, C:0.18, G:0.16, T:0.34


Found at i:593 original size:30 final size:32

Alignment explanation


    Indices: 559--622  Score: 78
    Period size: 33  Copynumber: 2.0  Consensus size: 32

        549 CTTTTCCTTC

                       *                    
        559 TCTTCTCTTTCTGT-C-CTTTTATTTACTTTT
          1 TCTTCTCTTTCGGTACACTTTTATTTACTTTT

                  *                     *    
        589 TCTTCTTTTTCGGTACATCTTTTATTTATTTTT
          1 TCTTCTCTTTCGGTACA-CTTTTATTTACTTTT

             
        622 T
          1 T

        623 AAATAAAGGA


Statistics
Matches: 28,  Mismatches: 3, Indels: 3
        0.82            0.09        0.09

Matches are distributed among these distances:
  30   12  0.43
  31    1  0.04
  33   15  0.54

ACGTcount: A:0.09, C:0.19, G:0.05, T:0.67


Consensus pattern (32 bp):   
TCTTCTCTTTCGGTACACTTTTATTTACTTTT
Done.