Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01001560.1 Corchorus olitorius cultivar O-4 contig01560, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 780

Length: 1300
ACGTcount: A:0.31, C:0.17, G:0.20, T:0.32


Found at i:1230 original size:19 final size:18

Alignment explanation


    Indices: 1187--1231  Score: 54
    Period size: 19  Copynumber: 2.4  Consensus size: 18

       1177 TATTTCTTCT

                    *         
       1187 TCTTCTCGCGCTTCTCCC
          1 TCTTCTCGAGCTTCTCCC

                            *  
       1205 TCATTCTCGAGCTTCTTCC
          1 TC-TTCTCGAGCTTCTCCC

                    
       1224 TGCTTCTC
          1 T-CTTCTC

       1232 ATTATGCCAG


Statistics
Matches: 23,  Mismatches: 2, Indels: 3
        0.82            0.07        0.11

Matches are distributed among these distances:
  18    2  0.09
  19   20  0.87
  20    1  0.04

ACGTcount: A:0.04, C:0.42, G:0.11, T:0.42


Consensus pattern (18 bp):   
TCTTCTCGAGCTTCTCCC
Done.