Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01015600.1 Corchorus olitorius cultivar O-4 contig15633, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3130
ACGTcount: A:0.32, C:0.20, G:0.22, T:0.26


Found at i:30 original size:15 final size:16

Alignment explanation


    Indices: 10--43  Score: 52
    Period size: 16  Copynumber: 2.2  Consensus size: 16

          1 GTTAGCAGC

                            
         10 CTCAGG-AGGAAAGAT
          1 CTCAGGAAGGAAAGAT

                        *   
         25 CTCAGGAAGGAATGAT
          1 CTCAGGAAGGAAAGAT

               
         41 CTC
          1 CTC

         44 CATATTTCGA


Statistics
Matches: 17,  Mismatches: 1, Indels: 1
        0.89            0.05        0.05

Matches are distributed among these distances:
  15    6  0.35
  16   11  0.65

ACGTcount: A:0.35, C:0.18, G:0.29, T:0.18


Consensus pattern (16 bp):   
CTCAGGAAGGAAAGAT

Done.