Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015603.1 Corchorus olitorius cultivar O-4 contig15636, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15956

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5026--5215
77
2.5
77
76
7
179
25
28
25
20
1.99
5762--5871
39
2.8
39
80
2
123
25
32
22
19
1.97
5661--6057
152
2.6
155
82
3
444
22
28
27
21
1.99
6183--6444
79
3.4
79
83
2
298
23
28
25
22
1.99
6404--6563
79
2.0
78
84
3
205
26
28
21
23
1.99
6404--6563
39
4.1
39
79
4
151
26
28
21
23
1.99
6247--6759
276
1.9
273
83
3
679
25
26
24
22
2.00
6522--6670
79
1.9
79
84
2
201
27
24
24
23
2.00
6522--6713
79
2.4
79
80
1
197
26
25
24
23
2.00
9258--9293
19
1.9
19
88
5
56
61
5
2
30
1.33
14106--14326
67
3.3
66
64
14
164
35
8
13
42
1.75
14101--14433
134
2.5
133
88
4
474
36
10
13
39
1.79

Tables:   1

The End!