Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015606.1 Corchorus olitorius cultivar O-4 contig15639, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  67448

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1931--1959
14
2.1
14
93
6
51
0
20
0
79
0.74
2752--2794
19
2.3
19
84
11
61
62
0
4
32
1.15
5098--5224
65
2.0
65
82
3
157
44
3
22
29
1.69
5537--6134
305
1.9
309
87
4
884
42
18
13
25
1.87
13262--13298
19
1.9
19
100
0
74
21
10
16
51
1.74
22543--22599
23
2.3
25
82
11
64
42
1
7
49
1.40
24114--24182
27
2.6
27
92
0
120
17
17
37
27
1.92
24176--24242
27
2.5
27
95
0
116
29
22
28
19
1.98
30329--30400
36
2.0
36
94
5
128
26
16
26
30
1.97
30885--30925
20
2.0
20
100
0
82
39
4
14
41
1.67
35318--35356
20
2.0
20
100
0
78
25
25
2
46
1.66
36019--36092
36
2.1
36
100
0
148
29
17
16
36
1.92
36102--36173
36
2.0
36
97
0
135
20
11
40
27
1.87
36156--36194
18
2.2
18
100
0
78
20
7
46
25
1.77
36162--36203
18
2.3
18
87
4
57
26
4
42
26
1.75
36495--36632
68
2.0
68
100
0
276
42
14
19
23
1.88
39215--39252
12
3.2
12
85
7
51
42
0
5
52
1.24
47635--47780
76
2.0
73
91
4
238
36
13
17
33
1.88
49630--49658
15
1.9
15
100
0
58
20
24
6
48
1.74
49561--49710
78
1.9
78
97
0
282
20
20
8
51
1.72
55770--55885
60
1.9
62
85
3
164
24
15
8
51
1.71
60659--60725
21
3.2
21
64
16
57
52
14
4
28
1.62
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
60647--60726
42
1.9
42
94
0
142
50
16
3
30
1.62
60799--60911
55
2.0
56
94
1
201
39
1
23
35
1.65
61097--61143
2
23.5
2
95
0
85
48
2
0
48
1.13
62764--62799
10
3.6
10
92
0
63
38
19
8
33
1.82
63512--63720
36
5.8
35
78
12
183
38
17
14
29
1.89
67079--67117
14
2.9
14
88
3
53
41
12
10
35
1.77

Tables:   1

The End!