Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015609.1 Corchorus olitorius cultivar O-4 contig15642, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  46855

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
865--910
20
2.3
20
100
0
92
47
0
32
19
1.50
1993--2030
11
3.5
11
89
10
51
39
0
2
57
1.12
6316--6412
47
2.1
47
100
0
194
45
14
21
18
1.85
6461--6510
24
2.0
25
92
3
84
26
34
8
32
1.85
8888--8913
13
2.0
13
100
0
52
23
7
0
69
1.14
18488--18523
18
2.0
18
100
0
72
33
22
22
22
1.97
19075--19127
19
2.7
20
80
13
65
50
5
28
15
1.66
26727--26766
9
4.4
9
93
6
64
45
27
2
25
1.66
32348--32379
3
10.7
3
100
0
64
68
0
31
0
0.90
35292--35330
18
2.2
18
95
0
69
74
7
5
12
1.20
37454--37514
30
2.0
30
93
0
104
47
3
22
26
1.67
38154--38183
4
7.5
4
100
0
60
50
23
0
26
1.50
39246--39350
51
2.1
51
91
5
171
59
6
2
31
1.38
42130--42167
19
1.9
19
89
5
58
50
7
13
28
1.69
43099--43189
45
2.0
44
95
2
164
18
23
8
49
1.75
43305--43385
27
3.2
27
63
20
66
48
12
12
27
1.76
43293--43390
48
2.0
48
94
0
169
51
13
10
25
1.72
45692--45830
72
1.9
75
91
7
230
46
8
11
33
1.70

Tables:   1

The End!