Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01015610.1 Corchorus olitorius cultivar O-4 contig15643, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3248
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.34


Found at i:585 original size:120 final size:120

Alignment explanation


    Indices: 442--686  Score: 438
    Period size: 120  Copynumber: 2.0  Consensus size: 120

        432 AATTGGAAGC

                                                                            *
        442 AATAATTTTTTTTTGTTATTCGATTTCTTTACTCTGAGTTTTTTCACTCCTATTATCCTCTTTGG
          1 AATAATTTTTTTTTGTTATTCGATTTCTTTACTCTGAGTTTTTTCACTCCTATTATCCTCTTTGC

                    *   *                                          
        507 TTACAATAGTATCTTCTCATTCACATCAATGGGAGCTACGATAGACCCCATA-TT
         66 TTACAATAATATATTCTCATTCACATCAATGGGAGCTACGATAGACCCCATAGTT

                                                *                            
        561 AATAATTTTTTTTTTGTTATTCGATTTCTTTACTCTTAGTTTTTTCACTCCTATTATCCTCTTTG
          1 AATAA-TTTTTTTTTGTTATTCGATTTCTTTACTCTGAGTTTTTTCACTCCTATTATCCTCTTTG

                                                                    
        626 CTTACAATAATATATTCTCATTCACATCAATGGGAGCTACGATAGACCCCATAGTT
         65 CTTACAATAATATATTCTCATTCACATCAATGGGAGCTACGATAGACCCCATAGTT

                 
        682 AATAA
          1 AATAA

        687 AAGAAGCAAA


Statistics
Matches: 120,  Mismatches: 4, Indels: 2
        0.95            0.03        0.02

Matches are distributed among these distances:
 119    5  0.04
 120  108  0.90
 121    7  0.06

ACGTcount: A:0.25, C:0.20, G:0.10, T:0.45


Consensus pattern (120 bp):   
AATAATTTTTTTTTGTTATTCGATTTCTTTACTCTGAGTTTTTTCACTCCTATTATCCTCTTTGC
TTACAATAATATATTCTCATTCACATCAATGGGAGCTACGATAGACCCCATAGTT
Done.