Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015611.1 Corchorus olitorius cultivar O-4 contig15644, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  49602

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1840--1951
2
56.0
2
98
0
215
0
0
49
50
1.06
2417--2479
27
2.4
25
78
21
67
61
1
7
28
1.33
2448--2480
13
2.6
13
90
4
50
63
0
9
27
1.24
5973--6105
22
6.0
22
73
11
112
36
18
10
35
1.85
5978--6101
44
2.8
44
81
4
135
36
16
10
36
1.84
6557--6595
13
2.9
13
82
17
53
46
0
0
53
1.00
6563--6595
15
2.4
14
90
10
50
48
0
0
51
1.00
12232--12307
37
2.1
37
100
0
152
44
15
13
26
1.83
12846--13781
465
2.0
464
97
1
1750
41
14
19
24
1.89
15026--15085
28
2.2
27
90
3
93
73
6
10
10
1.25
26293--26613
170
1.9
170
85
1
446
35
22
12
29
1.91
26895--27075
88
2.0
89
92
1
301
38
12
23
26
1.90
28057--28102
23
2.0
23
100
0
92
17
34
0
47
1.48
38999--39050
26
2.0
26
100
0
104
34
15
23
26
1.94
41465--41524
24
2.4
25
74
17
63
51
0
43
5
1.23
41851--41876
12
2.2
12
100
0
52
15
23
0
61
1.33
42312--42476
31
5.5
31
67
16
121
33
20
19
26
1.96
42316--42476
60
2.7
60
96
0
286
34
19
19
26
1.96
42520--42622
31
3.4
31
69
15
106
24
19
21
34
1.96
42521--42680
60
2.7
60
91
0
248
28
20
17
34
1.95
42518--42685
31
5.5
31
66
11
96
29
19
17
32
1.95
45061--45106
2
23.5
2
82
4
58
45
4
2
47
1.34
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46228--46254
14
1.9
14
100
0
54
37
18
22
22
1.95
46558--46676
46
2.6
46
94
1
202
42
16
6
33
1.75

Tables:   1

The End!