Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015612.1 Corchorus olitorius cultivar O-4 contig15645, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  32714

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5430--5470
19
2.2
19
100
0
82
36
19
0
43
1.51
9240--9273
7
4.9
7
100
0
68
44
0
0
55
0.99
12877--12930
23
2.3
23
93
0
90
40
0
18
40
1.51
13672--13710
16
2.4
16
91
0
60
41
28
7
23
1.82
15103--15352
121
2.0
127
86
7
359
50
1
10
37
1.46
20616--20701
43
2.0
43
97
0
163
27
34
3
33
1.74
28095--28295
106
1.9
106
86
0
285
29
17
20
31
1.96
28878--28906
14
2.1
14
100
0
58
13
27
37
20
1.91
28880--28914
14
2.5
14
90
0
52
20
22
31
25
1.98
28965--29042
42
1.9
40
92
5
129
23
19
30
26
1.98
29239--29304
14
4.7
14
90
0
87
16
9
33
40
1.80
29250--29306
28
2.0
28
96
0
105
17
8
33
40
1.81
30001--30114
51
2.2
51
95
0
201
32
11
39
16
1.84
30660--30727
33
2.1
33
91
0
109
26
29
14
29
1.95
31848--31894
2
23.5
2
89
8
69
53
0
2
44
1.12

Tables:   1

The End!