Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01015613.1 Corchorus olitorius cultivar O-4 contig15646, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3236
ACGTcount: A:0.32, C:0.21, G:0.16, T:0.31


Found at i:944 original size:2 final size:2

Alignment explanation


    Indices: 937--970  Score: 50
    Period size: 2  Copynumber: 17.0  Consensus size: 2

        927 ATAATAATAA

                         *                          *         
        937 AT AT AT AT AC AT AT AT AT AT AT AT AT AC AT AT AT
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT

        971 TCATTATATG


Statistics
Matches: 28,  Mismatches: 4, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
   2   28  1.00

ACGTcount: A:0.50, C:0.06, G:0.00, T:0.44


Consensus pattern (2 bp):   
AT

Done.