Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015615.1 Corchorus olitorius cultivar O-4 contig15648, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  45154

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
248--278
15
2.1
15
93
0
53
29
19
16
35
1.93
2211--2248
18
2.1
19
90
5
60
18
39
13
28
1.88
2294--2354
30
2.0
30
93
6
106
19
34
18
27
1.95
5577--5614
18
2.1
19
90
5
60
18
39
13
28
1.88
7182--7558
189
2.0
184
93
3
639
26
24
12
36
1.91
9004--9061
16
3.7
16
81
4
55
72
5
15
6
1.24
10084--10123
20
2.0
20
95
0
71
12
0
57
30
1.36
14924--14951
10
2.8
10
100
0
56
10
64
0
25
1.26
16112--16143
15
2.2
14
94
5
55
71
6
18
3
1.20
18212--18270
11
5.8
10
78
5
57
74
3
10
11
1.18
21615--21648
14
2.4
14
95
0
59
8
5
11
73
1.24
22678--22720
21
2.0
21
95
0
77
30
4
11
53
1.57
23633--23736
49
2.1
49
92
1
181
21
11
29
37
1.88
25237--25311
31
2.5
30
86
4
105
17
6
28
48
1.72
42830--42859
13
2.3
13
100
0
60
20
0
6
73
1.05
44715--44808
34
2.8
34
83
3
120
38
18
15
27
1.91

Tables:   1

The End!