Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01015621.1 Corchorus olitorius cultivar O-4 contig15654, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2767
ACGTcount: A:0.29, C:0.21, G:0.18, T:0.32


Found at i:2279 original size:24 final size:23

Alignment explanation


    Indices: 2228--2277  Score: 73
    Period size: 23  Copynumber: 2.2  Consensus size: 23

       2218 GTAAATTTAT

                     *  *          
       2228 GAAATTTTTCTCTATTAGATCTG
          1 GAAATTTTTATCAATTAGATCTG

                             *     
       2251 GAAATTTTTATCAATTATATCTG
          1 GAAATTTTTATCAATTAGATCTG

                
       2274 GAAA
          1 GAAA

       2278 ATGGAAATGA


Statistics
Matches: 24,  Mismatches: 3, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  23   24  1.00

ACGTcount: A:0.34, C:0.10, G:0.12, T:0.44


Consensus pattern (23 bp):   
GAAATTTTTATCAATTAGATCTG
Done.