genome.fa.s15625.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015625.1 Corchorus olitorius cultivar O-4 contig15658, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  115964

Tables:   1   

This is table  1  of  1  ( 68 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
328--734	203	2.0	202	93	2	692	43	7	11	37	1.69
805--851	25	1.9	24	95	4	85	55	8	6	29	1.55
842--922	39	2.0	40	88	2	119	37	3	7	51	1.48
9917--9985	31	2.2	31	84	5	86	26	8	30	34	1.86
10483--10520	17	2.2	17	90	0	58	23	13	31	31	1.93
11269--11298	14	2.1	14	100	0	60	50	13	0	36	1.42
11876--11950	27	2.7	27	74	10	71	17	4	4	74	1.12
12673--12823	75	2.0	76	84	1	196	37	15	24	23	1.93
13659--13876	22	9.7	22	75	9	120	37	11	14	36	1.82
13689--13856	65	2.6	65	79	7	153	38	10	14	36	1.80
13982--14041	23	2.7	22	82	7	77	38	13	15	33	1.86
13982--14107	22	5.7	21	67	22	71	38	12	15	33	1.85
15021--15045	1	25.0	1	100	0	50	0	0	0	100	0.00
36293--36318	10	2.6	10	100	0	52	57	0	7	34	1.27
40934--40963	14	2.1	14	100	0	60	60	6	13	20	1.55
41435--41463	14	2.1	14	100	0	58	44	13	13	27	1.82
42629--42670	17	2.5	17	96	0	75	11	40	7	40	1.69
45119--45167	23	2.1	23	88	0	71	32	8	14	44	1.74
48044--48113	20	3.5	20	100	0	140	18	27	34	20	1.96
50442--50507	32	2.1	32	91	0	105	16	10	33	39	1.83
50445--50509	16	4.1	16	74	4	60	18	9	33	38	1.83
52643--53145	30	16.7	30	89	2	670	30	20	20	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52676--53209	30	17.6	31	86	4	220	30	20	19	29	1.97
52880--53267	60	6.4	61	85	7	289	31	18	17	31	1.95
53164--53267	55	1.9	55	97	0	199	33	14	15	36	1.88
53787--53826	15	2.6	16	92	4	64	65	12	10	12	1.49
64251--64405	83	1.9	84	91	1	258	33	12	3	50	1.57
65868--65900	14	2.3	15	89	5	50	18	6	3	72	1.18
70061--70117	12	4.8	12	73	16	55	50	8	3	36	1.50
70061--70117	24	2.4	23	80	11	62	50	8	3	36	1.50
71293--71374	36	2.3	35	89	8	121	4	39	42	13	1.66
71341--71387	24	2.0	23	87	4	67	2	40	44	12	1.54
72667--72751	27	3.1	27	88	5	118	42	14	20	23	1.88
72721--72900	78	2.3	79	86	1	247	40	13	19	26	1.88
72721--72910	39	4.9	40	82	5	221	40	13	19	26	1.88
73010--73338	140	2.3	140	90	1	498	31	17	21	30	1.96
74799--74827	12	2.5	12	94	5	51	6	31	0	62	1.22
75299--75348	19	2.6	19	78	15	57	4	18	0	78	0.91
81565--81607	13	3.3	13	86	0	59	16	4	16	62	1.48
81786--81830	14	3.5	12	84	9	54	31	0	11	57	1.33
86052--86332	4	71.0	4	65	16	86	25	9	0	63	1.28
86061--86179	19	6.4	19	68	19	72	28	6	0	64	1.18
86053--86141	27	3.3	27	74	13	78	28	4	0	67	1.10
86059--86211	46	3.3	46	98	0	288	28	7	0	63	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
86100--86187	27	3.3	27	78	9	72	28	6	0	64	1.19
86109--86206	27	3.7	27	78	11	87	28	7	1	63	1.27
86081--86226	19	7.9	18	73	17	79	28	8	0	62	1.30
86059--86315	12	22.6	12	69	14	116	26	10	0	62	1.30
89305--89350	21	2.2	22	88	7	69	69	2	19	8	1.25
90803--90960	52	3.0	52	84	6	176	24	16	23	35	1.95
90926--91258	54	6.2	54	81	4	386	27	18	22	30	1.97
90927--91257	161	2.0	161	85	5	445	27	18	22	30	1.98
91257--91739	34	13.6	34	86	6	579	27	12	18	42	1.85
91256--91739	107	4.6	104	86	5	630	27	11	17	42	1.85
92955--93234	4	70.8	4	66	16	93	26	9	0	63	1.28
92959--93077	19	6.4	19	68	19	72	28	6	0	64	1.18
92955--93039	27	3.2	26	74	15	75	29	4	0	65	1.12
92957--93109	46	3.3	46	98	0	288	28	7	0	63	1.25
92998--93085	27	3.3	27	78	9	72	28	6	0	64	1.19
93007--93104	27	3.7	27	78	11	87	28	7	1	63	1.27
92979--93124	19	7.9	18	73	17	79	28	8	0	62	1.30
92957--93222	12	23.3	12	69	13	125	27	9	0	62	1.29
96273--96349	27	2.9	27	80	9	86	38	24	16	19	1.92
96273--96349	26	2.8	26	82	5	91	38	24	16	19	1.92
103864--103945	40	2.0	40	97	0	155	37	25	12	24	1.90
107197--107259	33	2.0	31	90	6	99	19	15	11	53	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
111611--111658	24	2.0	25	84	12	64	54	2	41	2	1.24
114043--114499	228	2.0	228	97	0	860	44	10	22	22	1.83

Tables:   1

The End!