Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015626.1 Corchorus olitorius cultivar O-4 contig15659, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  42676

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4036--4262
81
2.8
81
89
0
328
21
21
20
37
1.95
6315--6401
3
29.0
3
100
0
174
66
0
0
33
0.92
17157--17287
66
2.0
66
100
0
262
28
13
13
44
1.82
19041--19086
20
2.2
21
92
3
76
23
26
23
26
2.00
20240--20295
11
5.2
10
81
12
58
17
10
19
51
1.74
22299--22350
23
2.3
23
100
0
104
36
40
3
19
1.70
25166--25223
24
2.5
22
82
15
73
22
12
5
60
1.51
25177--25227
24
2.1
24
96
0
93
25
11
7
54
1.63
27156--27190
15
2.2
16
90
5
54
68
11
5
14
1.37
29539--29585
24
2.0
24
91
8
78
78
0
17
4
0.90
31568--31617
22
2.3
22
86
6
66
30
28
18
24
1.97
31423--31767
167
2.1
167
94
0
609
28
22
17
31
1.97
31590--32122
146
3.7
146
88
4
776
29
20
17
32
1.95
32342--32775
39
11.0
38
78
7
406
30
19
10
39
1.85
32309--32775
78
5.9
78
81
6
480
31
19
10
38
1.85
32309--32775
117
4.0
118
80
8
497
31
19
10
38
1.85
33076--33126
24
2.1
24
96
0
93
25
11
7
54
1.63
35213--35248
3
12.0
3
90
0
54
27
0
2
69
1.02
39623--39722
27
3.7
27
77
10
89
42
24
14
20
1.88
39796--39905
3
36.3
3
98
1
211
67
0
0
32
0.91
40698--40764
33
2.0
32
86
11
91
28
13
17
40
1.88
41410--41483
3
24.0
3
91
5
121
35
1
0
63
1.03

Tables:   1

The End!