Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01015627.1 Corchorus olitorius cultivar O-4 contig15660, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3868
ACGTcount: A:0.37, C:0.17, G:0.13, T:0.33


Found at i:599 original size:3 final size:3

Alignment explanation


    Indices: 591--617  Score: 54
    Period size: 3  Copynumber: 9.0  Consensus size: 3

        581 GCCCTACTTG

                                               
        591 TTA TTA TTA TTA TTA TTA TTA TTA TTA
          1 TTA TTA TTA TTA TTA TTA TTA TTA TTA

        618 AAGTTATCTC


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   24  1.00

ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67


Consensus pattern (3 bp):   
TTA

Found at i:3428 original size:17 final size:18

Alignment explanation


    Indices: 3393--3428  Score: 56
    Period size: 18  Copynumber: 2.1  Consensus size: 18

       3383 CTCCTCTATC

                     *        
       3393 ATGAAAACACTTCTTTTT
          1 ATGAAAACAATTCTTTTT

                              
       3411 ATGAAAACAATT-TTTTT
          1 ATGAAAACAATTCTTTTT

             
       3428 A
          1 A

       3429 ATTACCCTTT


Statistics
Matches: 17,  Mismatches: 1, Indels: 1
        0.89            0.05        0.05

Matches are distributed among these distances:
  17    6  0.35
  18   11  0.65

ACGTcount: A:0.39, C:0.11, G:0.06, T:0.44


Consensus pattern (18 bp):   
ATGAAAACAATTCTTTTT
Done.