Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015636.1 Corchorus olitorius cultivar O-4 contig15669, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  84135

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3787--3818
16
1.9
17
93
6
57
81
0
9
9
0.88
4029--4058
12
2.4
13
88
11
53
66
13
6
13
1.43
11181--11341
69
2.3
70
90
1
252
26
22
29
21
1.99
13843--13967
65
1.9
65
96
0
232
20
30
28
20
1.98
14157--14198
21
2.0
21
95
0
75
35
28
16
19
1.93
15861--15908
25
1.9
25
83
8
62
56
0
2
41
1.11
16158--16207
6
8.2
6
95
4
91
34
0
2
64
1.05
17039--17063
1
25.0
1
100
0
50
100
0
0
0
0.00
21083--21164
41
2.0
41
97
0
155
47
4
25
21
1.71
21083--21146
20
3.2
20
63
20
51
50
6
21
21
1.71
21298--21349
24
2.2
23
83
10
61
75
11
7
5
1.19
21313--21354
22
1.9
23
90
9
70
73
14
4
7
1.21
25944--25979
1
36.0
1
100
0
72
100
0
0
0
0.00
27893--27932
16
2.4
17
87
4
55
55
25
10
10
1.64
27855--27929
32
2.3
32
75
8
80
53
25
12
9
1.67
34851--34906
16
3.6
15
72
9
58
39
32
8
19
1.83
34849--34942
32
2.9
32
84
3
109
39
29
9
21
1.85
43739--43788
22
2.3
23
93
6
86
64
8
10
18
1.48
43862--43899
19
2.0
19
100
0
76
42
21
10
26
1.85
44033--44136
53
2.0
53
92
0
172
35
18
7
38
1.79
44621--44663
21
2.0
21
100
0
86
32
44
9
13
1.76
45473--45545
33
2.3
32
90
6
114
34
9
23
32
1.87
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45633--45667
16
2.2
16
95
5
63
71
5
5
17
1.25
45994--46037
22
2.0
22
100
0
88
36
18
4
40
1.71
45982--46006
2
12.5
2
100
0
50
48
0
0
52
1.00
57737--58741
436
2.3
436
81
4
1162
42
12
13
31
1.81
58975--59035
32
1.9
32
96
0
113
26
21
6
45
1.76
60479--60505
11
2.5
11
100
0
54
18
7
0
74
1.05
60485--60531
15
3.3
15
77
14
55
21
4
2
72
1.12
60485--60557
19
3.7
20
78
10
71
26
2
1
69
1.09
60486--60542
27
2.2
26
81
15
73
24
3
1
70
1.13
63097--63132
17
2.1
17
94
0
63
11
11
8
69
1.37
65516--65546
16
1.9
16
100
0
62
61
6
19
12
1.53
65850--65884
17
2.1
17
100
0
70
60
17
11
11
1.59
66112--66173
31
2.0
31
93
0
106
38
12
8
40
1.73
67769--67798
3
9.7
3
92
7
51
36
0
0
63
0.95
71699--71732
2
17.0
2
100
0
68
50
0
0
50
1.00
81427--81513
42
2.1
42
97
0
165
40
9
22
27
1.85

Tables:   1

The End!