genome.fa.s15638.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015638.1 Corchorus olitorius cultivar O-4 contig15671, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  54491

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
328--418	45	2.1	43	87	6	130	38	24	4	32	1.75
3540--3597	2	28.5	2	87	6	82	48	3	1	46	1.29
3524--3607	39	2.2	39	86	4	116	44	3	4	47	1.41
5091--5172	22	3.7	23	79	12	84	37	12	12	37	1.80
5134--5237	23	4.7	23	84	6	119	38	16	8	36	1.79
5117--5221	45	2.3	45	80	7	115	39	16	7	37	1.77
5207--5254	16	2.7	18	81	9	55	41	14	8	35	1.76
5110--5345	22	11.0	22	75	10	179	35	17	8	38	1.80
5115--5507	44	9.3	43	70	14	176	35	16	8	39	1.80
5360--5611	22	11.5	22	74	7	140	34	14	9	41	1.78
5386--5611	22	10.4	22	75	9	151	34	15	8	41	1.78
5384--5531	66	2.2	66	82	0	170	35	14	8	41	1.77
5362--5552	44	4.4	44	78	5	192	35	13	8	42	1.76
5359--5525	88	1.9	88	86	2	237	34	13	9	41	1.77
5518--5573	23	2.5	22	88	5	78	37	10	8	42	1.71
5566--5609	20	2.1	21	83	4	54	31	18	9	40	1.81
6621--6664	19	2.3	19	100	0	88	0	31	18	50	1.47
11953--12263	158	2.0	158	96	0	568	33	15	12	38	1.85
15701--15846	73	2.0	73	97	0	274	46	10	17	24	1.80
20629--20684	28	2.0	29	89	3	87	35	23	19	21	1.96
20868--21347	240	2.0	240	94	0	845	25	26	20	27	1.99
24222--24262	17	2.4	17	95	0	73	29	19	19	31	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28231--28266	19	1.9	18	88	5	54	27	22	8	41	1.82
29075--29122	21	2.3	21	78	7	53	31	41	16	10	1.82
29593--29705	56	2.0	56	100	0	226	30	14	26	29	1.95
32016--32055	21	1.9	21	89	0	62	25	20	35	20	1.96
35203--35263	32	1.9	32	93	6	106	27	19	18	34	1.95
35197--35279	32	2.6	31	84	7	105	26	19	19	34	1.95
47620--47715	34	2.8	34	87	0	129	38	18	15	27	1.91
51233--51282	25	2.0	25	96	0	91	40	18	24	18	1.91
51265--52275	32	31.6	32	84	7	1238	37	15	26	20	1.92
51265--52275	162	6.3	164	86	6	1296	37	15	26	20	1.92
51265--52280	130	7.9	130	87	6	1287	37	15	26	20	1.92

Tables:   1

The End!