Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015640.1 Corchorus olitorius cultivar O-4 contig15673, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  49251

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
20838--20884
16
2.8
18
81
15
64
46
0
2
51
1.13
23321--23488
86
1.9
87
90
1
266
37
12
22
27
1.90
24225--24733
37
13.8
37
72
6
325
24
19
14
41
1.88
24222--24735
74
6.9
74
85
3
644
24
19
14
41
1.88
24850--24921
7
10.3
7
90
0
81
47
12
5
34
1.65
24989--25046
27
2.1
28
90
3
91
43
12
5
39
1.64
24996--25054
27
2.2
27
81
6
66
42
13
6
37
1.71
25162--25307
54
2.7
54
94
0
247
28
15
19
36
1.92
25162--25378
108
2.0
108
80
10
239
28
16
21
34
1.94
32126--32163
19
2.0
19
89
0
58
39
7
50
2
1.46
35694--35746
23
2.3
25
75
18
60
54
3
5
35
1.42
44749--44823
31
2.4
31
93
4
125
22
21
17
38
1.93
44910--44966
20
2.8
21
80
20
59
66
0
5
28
1.13
44921--44968
19
2.5
20
84
15
66
70
0
6
22
1.09
44911--44963
21
2.5
20
79
14
63
66
0
5
28
1.15
45418--46184
67
11.5
67
81
8
743
40
14
20
23
1.90
45450--46182
268
2.7
268
88
4
1000
41
15
20
23
1.90
47630--47675
2
23.5
2
88
4
67
45
4
0
50
1.21
47636--47675
21
1.9
21
94
0
71
45
5
0
50
1.23

Tables:   1

The End!